Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K17
         (264 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    21   2.6  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    20   4.5  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                20   4.5  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    20   5.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    20   5.9  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    19   7.8  

>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 21.0 bits (42), Expect = 2.6
 Identities = 7/27 (25%), Positives = 15/27 (55%)
 Frame = -3

Query: 130 NKNIHFDTYENKQHNSRDNIFINHLNM 50
           N N + + Y N  +N+   ++ N +N+
Sbjct: 335 NNNYNNNNYNNNYNNNCKKLYYNIINI 361


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -2

Query: 242 MPAYLDTYINFFTT 201
           +PAYL+TY   F T
Sbjct: 206 VPAYLNTYKGDFPT 219



 Score = 19.4 bits (38), Expect = 7.8
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +2

Query: 74  IIPRVVLFIFICVKMYIFIYLFNTL 148
           I+P   L + +  K  +F ++ NT+
Sbjct: 285 ILPPTSLVLPLIAKYLLFTFIMNTV 309


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 20.2 bits (40), Expect = 4.5
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 127 KNIHFDTYENKQHNSRDNIFINHLNMVLFL 38
           K I  + Y N  ++ +   F+ H N+V  L
Sbjct: 94  KIIQTEKYSNMLNSEKHASFLKHSNIVKVL 123


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 7/24 (29%), Positives = 13/24 (54%)
 Frame = -3

Query: 130 NKNIHFDTYENKQHNSRDNIFINH 59
           N N + + Y N  +N  +N + N+
Sbjct: 326 NNNYNNNNYNNNYNNYNNNNYNNY 349


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = +3

Query: 99  FSYVSKCIFLFIYLTLYYEQSGFNALGIYSHSI 197
           F+  + C+    ++ LY+      AL I S S+
Sbjct: 852 FTMYTTCVIWLAFVPLYFGTGNNVALRITSMSV 884


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 19.4 bits (38), Expect = 7.8
 Identities = 8/28 (28%), Positives = 14/28 (50%)
 Frame = -3

Query: 130 NKNIHFDTYENKQHNSRDNIFINHLNMV 47
           NK IH +   N  +N +    IN++  +
Sbjct: 309 NKTIHNNNNYNNYNNKKLYYNINYIEQI 336


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,266
Number of Sequences: 438
Number of extensions: 1358
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  4887441
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)