Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K16
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0470 - 10700092-10700505 114 3e-26
10_08_0951 - 21769342-21769752 113 4e-26
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 31 0.25
08_02_0167 - 13564466-13566227,13566361-13566644,13566684-135675... 29 1.4
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 29 1.8
10_02_0059 + 4785858-4786988 29 1.8
09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555 29 1.8
09_02_0555 - 10588685-10592038 29 1.8
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 29 1.8
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 29 1.8
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 29 1.8
03_02_1029 - 13488535-13493037 29 1.8
03_05_0527 + 25220375-25221425,25221513-25222182,25222347-252224... 27 4.1
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 27 4.1
10_08_0922 - 21593030-21593225,21593319-21594142 27 5.5
03_06_0508 + 34417540-34417649,34418239-34418338,34418445-344184... 27 5.5
12_02_0856 + 23708234-23708420,23709364-23709567,23709689-237099... 27 7.2
08_01_0775 - 7531397-7531564,7531590-7532771 27 7.2
03_06_0285 + 32848085-32848988,32849057-32849245,32850136-328503... 27 7.2
06_03_0449 + 20907491-20910146,20910313-20910782 26 9.5
05_07_0308 + 29115892-29116083,29116771-29116885,29116978-291170... 26 9.5
01_01_0758 + 5843702-5843874,5844021-5844083,5844174-5844290,584... 26 9.5
>02_02_0470 - 10700092-10700505
Length = 137
Score = 114 bits (274), Expect = 3e-26
Identities = 47/92 (51%), Positives = 70/92 (76%)
Frame = +1
Query: 25 MGKIMKPGKVVLVLSGRYARRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
M K +KPGK V++L GRYA RKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++
Sbjct: 1 MVKFLKPGKAVILLQGRYAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 205 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFE 300
K K+S++K F+K VN+ H+MPTRY++D F+
Sbjct: 61 KTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFK 92
>10_08_0951 - 21769342-21769752
Length = 136
Score = 113 bits (273), Expect = 4e-26
Identities = 50/121 (41%), Positives = 82/121 (67%)
Frame = +1
Query: 25 MGKIMKPGKVVLVLSGRYARRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
M K +KPGK V++L GR+A RKA++V+ ++EGT D+PYGH VAG+ +YP+KV ++
Sbjct: 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAK 60
Query: 205 KIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLRLTQGSVSKRDT 384
K K+S++K F+K VN+ HLMPTRY++D ++ +A + KK+ + + ++ +
Sbjct: 61 KTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVAACKSAKARLED 120
Query: 385 R 387
R
Sbjct: 121 R 121
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 31.5 bits (68), Expect = 0.25
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +1
Query: 16 PSKMGKIMKPGKVVLVLSGRYARRKAIVVKNYDEG 120
P+K+ + PG V+++L+GRY ++ + +K G
Sbjct: 68 PTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSG 102
>08_02_0167 -
13564466-13566227,13566361-13566644,13566684-13567540,
13567684-13567957,13567973-13568218
Length = 1140
Score = 29.1 bits (62), Expect = 1.4
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 350 RSFLRLAGSFRSFALNFSKL 291
RSFL LAG +R F NFSK+
Sbjct: 505 RSFLGLAGYYRRFIKNFSKI 524
>10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 350 RSFLRLAGSFRSFALNFSKL 291
RSFL LAG +R F NFSK+
Sbjct: 954 RSFLGLAGYYRRFIENFSKI 973
>10_02_0059 + 4785858-4786988
Length = 376
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 350 RSFLRLAGSFRSFALNFSKL 291
RSFL LAG +R F NFSK+
Sbjct: 224 RSFLGLAGYYRRFIENFSKI 243
>09_04_0061 - 14256767-14256845,14256862-14257224,14260846-14261555
Length = 383
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 350 RSFLRLAGSFRSFALNFSKL 291
RSFL LAG +R F NFSK+
Sbjct: 281 RSFLGLAGYYRRFIENFSKI 300
>09_02_0555 - 10588685-10592038
Length = 1117
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 350 RSFLRLAGSFRSFALNFSKL 291
RSFL LAG +R F NFSK+
Sbjct: 411 RSFLGLAGYYRRFIENFSKI 430
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 350 RSFLRLAGSFRSFALNFSKL 291
RSFL LAG +R F NFSK+
Sbjct: 453 RSFLGLAGYYRRFIENFSKI 472
>08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 350 RSFLRLAGSFRSFALNFSKL 291
RSFL LAG +R F NFSK+
Sbjct: 985 RSFLGLAGYYRRFIENFSKI 1004
>07_03_1512 + 27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 350 RSFLRLAGSFRSFALNFSKL 291
RSFL LAG +R F NFSK+
Sbjct: 1071 RSFLGLAGYYRRFIENFSKI 1090
>03_02_1029 - 13488535-13493037
Length = 1500
Score = 28.7 bits (61), Expect = 1.8
Identities = 13/20 (65%), Positives = 15/20 (75%)
Frame = -2
Query: 350 RSFLRLAGSFRSFALNFSKL 291
RSFL LAG +R F NFSK+
Sbjct: 794 RSFLGLAGYYRRFIENFSKI 813
>03_05_0527 +
25220375-25221425,25221513-25222182,25222347-25222440,
25222688-25222870
Length = 665
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -2
Query: 350 RSFLRLAGSFRSFALNFSKL 291
RSFL LAG +R F NFS++
Sbjct: 641 RSFLGLAGYYRRFIENFSRI 660
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 27.5 bits (58), Expect = 4.1
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +3
Query: 159 HRQIPAQGS*KDGKK*NSQAVENQAFRKRCKLQSSN 266
H+Q + GS DG NS + N+A +KR K+ SS+
Sbjct: 418 HQQAQSIGSMLDGSIPNSFGLANRASKKRKKIVSSS 453
>10_08_0922 - 21593030-21593225,21593319-21594142
Length = 339
Score = 27.1 bits (57), Expect = 5.5
Identities = 16/57 (28%), Positives = 25/57 (43%)
Frame = -1
Query: 231 LDFRPLVNFIFSHPFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAED 61
L F P N + + P LA + V V + +++D+G A V AA+D
Sbjct: 105 LRFLPCTNALLAEPVEGLAYFDAHRDEVMEGVSDVYRNVCRVIFDDGVAAAVAAADD 161
>03_06_0508 +
34417540-34417649,34418239-34418338,34418445-34418478,
34418559-34418635,34418929-34419005,34419060-34419224,
34419306-34419420,34419546-34419650
Length = 260
Score = 27.1 bits (57), Expect = 5.5
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = -1
Query: 258 IVVYTFYERLDFRPLVNFIFSH-PFMNLARVSVDAG 154
I+V T+ ERL+ +V IF H P +N + VD G
Sbjct: 14 IIVPTYNERLNVALIVYLIFKHLPDVNFEIIVVDDG 49
>12_02_0856 +
23708234-23708420,23709364-23709567,23709689-23709918,
23710174-23710174,23710268-23710788
Length = 380
Score = 26.6 bits (56), Expect = 7.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -1
Query: 243 FYERLDFRPLVNFIFSHPFMNLARVSVDAGDES 145
F R D PL N++F H N VSV +S
Sbjct: 177 FAVRDDLEPLRNYVFRHAIYNYEAVSVKPKTDS 209
>08_01_0775 - 7531397-7531564,7531590-7532771
Length = 449
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = -2
Query: 350 RSFLRLAGSFRSFALNFSKL 291
R FL LAG +R F NFSK+
Sbjct: 90 RRFLGLAGYYRRFIENFSKI 109
>03_06_0285 +
32848085-32848988,32849057-32849245,32850136-32850311,
32850569-32851141
Length = 613
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 125 LTNHTDMLSSPASTDTRARFIK 190
LT++T SSPA+T T A FI+
Sbjct: 505 LTDYTGTPSSPATTTTNATFIR 526
>06_03_0449 + 20907491-20910146,20910313-20910782
Length = 1041
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = -1
Query: 156 GDESMSVWFVRCALVVILYDNGFTACVPA 70
GD +W + V++ +NGFT +PA
Sbjct: 432 GDFPEKIWSFQKLTTVMIQNNGFTGALPA 460
>05_07_0308 +
29115892-29116083,29116771-29116885,29116978-29117087,
29118225-29118350,29118450-29118570,29118665-29118749,
29118854-29118967,29119061-29119100,29119517-29119665,
29120223-29120412,29121674-29122228,29123588-29123815,
29123904-29124044,29124134-29124334,29124447-29124728
Length = 882
Score = 26.2 bits (55), Expect = 9.5
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +1
Query: 190 RMGKNKIHKRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLRLTQGSV 369
R GK++ K ++K KG + P+R S S +F A+ P +R+ + Q ++
Sbjct: 535 RSGKSQERKLKRMKASEKGSRVSVKTPSRKSKKSSSSQFIAEWKNYPGRRRSIVREQSAL 594
>01_01_0758 +
5843702-5843874,5844021-5844083,5844174-5844290,
5847180-5847945
Length = 372
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 384 CISLRNGPLC*TQLLALSWVF*VLCTEFFKAEVYRI 277
CI + GP+ LS+VF + C+ FF EV +
Sbjct: 270 CIQ-KKGPVFLAMSSPLSFVFTIFCSSFFLGEVVHL 304
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,500,188
Number of Sequences: 37544
Number of extensions: 235791
Number of successful extensions: 620
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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