Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K16
         (399 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    25   0.24 
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    25   0.24 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   6.9  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    20   9.1  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 41   NLEKWCWSSAAGTHAVKPLS*RITTRAHLTNHTDMLSSPAS 163
            NL++   S  A +H +K L    T + +LT+H  + SSP+S
Sbjct: 1447 NLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSS 1487


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 25.4 bits (53), Expect = 0.24
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 41   NLEKWCWSSAAGTHAVKPLS*RITTRAHLTNHTDMLSSPAS 163
            NL++   S  A +H +K L    T + +LT+H  + SSP+S
Sbjct: 1443 NLDELQLSRHATSHELKGLLCGNTYQLYLTSHNKIGSSPSS 1483


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 20.6 bits (41), Expect = 6.9
 Identities = 6/8 (75%), Positives = 8/8 (100%)
 Frame = -2

Query: 374 FETDPCVK 351
           +ETDPCV+
Sbjct: 715 YETDPCVR 722


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 20.2 bits (40), Expect = 9.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 344 SCV*HKGPFRREIQER 391
           SC   KG FRR IQ++
Sbjct: 83  SCEGCKGFFRRSIQQK 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 119,025
Number of Sequences: 438
Number of extensions: 2503
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used:  9885360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)