Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K15
         (366 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1217 + 9830435-9830770                                           29   1.5  
11_03_0112 - 10135052-10135168,10135712-10135795,10135879-101359...    27   6.0  

>01_01_1217 + 9830435-9830770
          Length = 111

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +2

Query: 95  FLFIYTIAFLIYFFLLPTHTFHEGL 169
           F+F++   FL++  LLPT  +H G+
Sbjct: 7   FIFLFFFIFLVFLPLLPTPPWHSGV 31


>11_03_0112 -
           10135052-10135168,10135712-10135795,10135879-10135953,
           10137801-10137978,10138048-10138212,10138291-10138337,
           10140233-10140301,10140531-10140629,10141256-10141375,
           10141459-10141581,10149251-10149364,10150725-10150913,
           10151058-10151110,10151365-10151470,10151957-10152085
          Length = 555

 Score = 26.6 bits (56), Expect = 6.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 213 SYIYIDIWLL*KKYCSPSWNVWVGNK 136
           S+I   +W    KY  P +NVW  NK
Sbjct: 104 SWIQDIVWTYLNKYVDPMFNVWPFNK 129


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,758,024
Number of Sequences: 37544
Number of extensions: 118492
Number of successful extensions: 246
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 246
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)