Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K15
         (366 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   3.4  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   6.0  
DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex det...    21   6.0  
DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex det...    21   6.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   6.0  
DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex det...    21   6.0  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    21   6.0  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   6.0  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   6.0  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    20   8.0  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    20   8.0  

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 3.4
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 92  LFLFIYTIAFLIYFFLL 142
           LFL+I+TIA ++  F++
Sbjct: 488 LFLWIFTIASIVGTFII 504


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 70  RVFHSMIIVFIYIHNSIFNLLFF 138
           +VF + I ++ Y+   IF +LF+
Sbjct: 218 KVFVTCIFIWAYVIPLIFIILFY 240


>DQ325109-1|ABD14123.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 126 IKNAIVYINKNNYHGMEY 73
           + N  ++ N NNY  ++Y
Sbjct: 85  LSNKTIHNNNNNYKKLQY 102


>DQ325108-1|ABD14122.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 126 IKNAIVYINKNNYHGMEY 73
           + N  ++ N NNY  ++Y
Sbjct: 85  LSNKTIHNNNNNYKKLQY 102


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 126 IKNAIVYINKNNYHGMEY 73
           + N  ++ N NNY  ++Y
Sbjct: 85  LSNKTIHNNNNNYKKLQY 102


>DQ325106-1|ABD14120.1|  177|Apis mellifera complementary sex
           determiner protein.
          Length = 177

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 126 IKNAIVYINKNNYHGMEY 73
           + N  ++ N NNY  ++Y
Sbjct: 85  LSNKTIHNNNNNYKKLQY 102


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = -1

Query: 126 IKNAIVYINKNNYHGMEY 73
           + N  ++ N NNY  ++Y
Sbjct: 318 LSNKTIHNNNNNYKKLQY 335


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 70  RVFHSMIIVFIYIHNSIFNLLFF 138
           +VF + I ++ Y+   IF +LF+
Sbjct: 218 KVFVTCIFIWAYVIPLIFIILFY 240


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 6.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 152 TFHEGLQYFFYN 187
           TFHEG + F+++
Sbjct: 181 TFHEGRKQFYFH 192


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 121 FNLLFFVTYPHI 156
           FNL++++ Y HI
Sbjct: 419 FNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 20.2 bits (40), Expect = 8.0
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 121 FNLLFFVTYPHI 156
           FNL++++ Y HI
Sbjct: 419 FNLMYWIIYLHI 430


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,118
Number of Sequences: 438
Number of extensions: 1661
Number of successful extensions: 14
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8680350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)