Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K14
         (407 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.0  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    22   2.0  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   3.5  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   6.1  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 7/11 (63%), Positives = 10/11 (90%)
 Frame = -2

Query: 238 CLQSLVLAPHQ 206
           C+Q+LV+ PHQ
Sbjct: 613 CMQNLVINPHQ 623


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 22.2 bits (45), Expect = 2.0
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +2

Query: 239 TKHRCFCCMFVTF 277
           T H  FCC F+ F
Sbjct: 177 TMHLLFCCAFIFF 189



 Score = 21.0 bits (42), Expect = 4.6
 Identities = 6/11 (54%), Positives = 7/11 (63%)
 Frame = +2

Query: 245 HRCFCCMFVTF 277
           H  FCC F+ F
Sbjct: 265 HLLFCCAFIIF 275


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 273 PSPNPHTHPATCSS 314
           PSP P +HP T  S
Sbjct: 119 PSPGPPSHPYTVIS 132


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 6.1
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +1

Query: 73  KAFLHWYTGE 102
           KA L W+TGE
Sbjct: 333 KAHLRWHTGE 342


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,732
Number of Sequences: 336
Number of extensions: 1039
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 51
effective length of database: 105,449
effective search space used:  8857716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)