Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K14
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces...   111   5e-26
SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|ch...    58   4e-10
SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha 2|Schizosacchar...    58   4e-10
SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|...    39   3e-04
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    27   0.85 
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    24   7.9  
SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2 |Schizosa...    24   7.9  

>SPBC26H8.07c |nda3|ben1, alp12|tubulin beta |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 448

 Score =  111 bits (266), Expect = 5e-26
 Identities = 48/55 (87%), Positives = 54/55 (98%)
 Frame = +1

Query: 10  STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 174
           ST+IQE+F+R+ +QF+AMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 371 STSIQEIFRRLGDQFSAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425


>SPBC16A3.15c |nda2||tubulin alpha 1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 455

 Score = 58.4 bits (135), Expect = 4e-10
 Identities = 22/54 (40%), Positives = 38/54 (70%)
 Frame = +1

Query: 10  STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 171
           +T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 385 TTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 438


>SPBC800.05c |tub1|atb2, alp2, ban5|tubulin alpha
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 449

 Score = 58.4 bits (135), Expect = 4e-10
 Identities = 22/54 (40%), Positives = 38/54 (70%)
 Frame = +1

Query: 10  STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 171
           +T+I E + R+  +F  M+ ++AF+HWY GEGM+E EF+EA  ++  L  +Y++
Sbjct: 381 TTSIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALERDYEE 434


>SPBC32F12.04 |tug1|gtb1|gamma-tubulin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 446

 Score = 38.7 bits (86), Expect = 3e-04
 Identities = 20/55 (36%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
 Frame = +1

Query: 13  TAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMN---DLVSEYQ 168
           T+I  LFKR  +Q+  + +R AFL  Y  E + E +  E +S+ +   DL++EY+
Sbjct: 382 TSIASLFKRTLDQYDRLRKRNAFLEQYKKEAIFEDDLNEFDSSRDVVADLINEYE 436


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 27.5 bits (58), Expect = 0.85
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +1

Query: 1   ARGSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDE 114
           A  S+ IQ L K I+   T  +R    ++ Y+G G+DE
Sbjct: 191 AENSSEIQALEKSINTFTTYQYRAPEMINLYSGLGIDE 228


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
            Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +1

Query: 37   RISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSE 162
            ++ E+F+ +F RK  L WY   G+      E + N+N   SE
Sbjct: 1714 KLLERFSLIFLRKCALLWYCRYGVS----FETQPNLNFQNSE 1751


>SPBC1105.15c |htd2||3-hydroxyacyl-ACP dehydratase Htd2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -1

Query: 377 KHVYIRRKFY 348
           KHVYIRRK Y
Sbjct: 140 KHVYIRRKIY 149


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,161,609
Number of Sequences: 5004
Number of extensions: 15930
Number of successful extensions: 47
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 47
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 47
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)