Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K14
(407 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) near... 116 8e-27
At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) near... 116 8e-27
At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8) ide... 116 8e-27
At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly iden... 116 8e-27
At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical t... 116 8e-27
At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly iden... 116 8e-27
At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly iden... 114 2e-26
At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly iden... 114 2e-26
At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly iden... 114 2e-26
At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5) ne... 63 6e-11
At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3) ne... 63 6e-11
At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly ide... 63 6e-11
At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly ide... 63 6e-11
At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2) id... 63 6e-11
At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4) ne... 63 6e-11
At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical t... 28 2.8
At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical t... 28 2.8
At2g03690.1 68415.m00328 coenzyme Q biosynthesis Coq4 family pro... 28 2.8
At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-conta... 27 6.4
At3g15410.1 68416.m01955 leucine-rich repeat family protein cont... 26 8.5
At1g14850.1 68414.m01776 non-repetitive/WGA-negative nucleoporin... 26 8.5
>At5g62700.1 68418.m07868 tubulin beta-2/beta-3 chain (TUB3) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 116 bits (278), Expect = 8e-27
Identities = 51/55 (92%), Positives = 55/55 (100%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 174
ST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 371 STSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>At5g62690.1 68418.m07867 tubulin beta-2/beta-3 chain (TUB2) nearly
identical to SP|P29512 Tubulin beta-2/beta-3 chain
{Arabidopsis thaliana}
Length = 450
Score = 116 bits (278), Expect = 8e-27
Identities = 51/55 (92%), Positives = 55/55 (100%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 174
ST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 371 STSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>At5g23860.1 68418.m02801 tubulin beta-8 chain (TUB8) (TUBB8)
identical to SP|P29516 Tubulin beta-8 chain {Arabidopsis
thaliana}; supporting cDNA gi|15451225|gb|AY054693.1|
Length = 449
Score = 116 bits (278), Expect = 8e-27
Identities = 51/55 (92%), Positives = 55/55 (100%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 174
ST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 371 STSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>At5g12250.1 68418.m01439 tubulin beta-6 chain (TUB6) nearly
identical to SP|P29514 Tubulin beta-6 chain {Arabidopsis
thaliana}
Length = 449
Score = 116 bits (278), Expect = 8e-27
Identities = 51/55 (92%), Positives = 55/55 (100%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 174
ST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 371 STSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>At2g29550.1 68415.m03589 tubulin beta-7 chain (TUB7) identical to
GB:M84704 SP|P29515 Tubulin beta-7 chain {Arabidopsis
thaliana}
Length = 449
Score = 116 bits (278), Expect = 8e-27
Identities = 51/55 (92%), Positives = 55/55 (100%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 174
ST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 371 STSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 425
>At1g75780.1 68414.m08801 tubulin beta-1 chain (TUB1) nearly
identical to SP|P12411 Tubulin beta-1 chain {Arabidopsis
thaliana}
Length = 447
Score = 116 bits (278), Expect = 8e-27
Identities = 51/55 (92%), Positives = 55/55 (100%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 174
ST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY
Sbjct: 372 STSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 426
>At5g44340.1 68418.m05429 tubulin beta-4 chain (TUB4) nearly
identical to SP|P24636 Tubulin beta-4 chain {Arabidopsis
thaliana}
Length = 444
Score = 114 bits (275), Expect = 2e-26
Identities = 50/55 (90%), Positives = 55/55 (100%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 174
ST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 371 STSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>At4g20890.1 68417.m03029 tubulin beta-9 chain (TUB9) nearly
identical to SP|P29517 Tubulin beta-9 chain {Arabidopsis
thaliana}
Length = 444
Score = 114 bits (275), Expect = 2e-26
Identities = 50/55 (90%), Positives = 55/55 (100%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 174
ST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 371 STSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 425
>At1g20010.1 68414.m02506 tubulin beta-5 chain (TUB5) nearly
identical to SP|P29513 Tubulin beta-5 chain {Arabidopsis
thaliana}
Length = 449
Score = 114 bits (275), Expect = 2e-26
Identities = 50/55 (90%), Positives = 55/55 (100%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQY 174
ST+IQE+F+R+SEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLV+EYQQY
Sbjct: 372 STSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVAEYQQY 426
>At5g19780.1 68418.m02351 tubulin alpha-3/alpha-5 chain (TUA5)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 63.3 bits (147), Expect = 6e-11
Identities = 24/54 (44%), Positives = 39/54 (72%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 171
+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 381 NTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At5g19770.1 68418.m02350 tubulin alpha-3/alpha-5 chain (TUA3)
nearly identical to SP|P20363 Tubulin alpha-3/alpha-5
chain {Arabidopsis thaliana}
Length = 450
Score = 63.3 bits (147), Expect = 6e-11
Identities = 24/54 (44%), Positives = 39/54 (72%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 171
+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 381 NTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At4g14960.2 68417.m02299 tubulin alpha-6 chain (TUA6) nearly
identical to SP|P29511 Tubulin alpha-6 chain
{Arabidopsis thaliana}
Length = 450
Score = 63.3 bits (147), Expect = 6e-11
Identities = 24/54 (44%), Positives = 39/54 (72%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 171
ST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 381 STSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At1g64740.1 68414.m07340 tubulin alpha-1 chain (TUA1) nearly
identical to SP|P11139 Tubulin alpha-1 chain
{Arabidopsis thaliana}
Length = 450
Score = 63.3 bits (147), Expect = 6e-11
Identities = 24/54 (44%), Positives = 39/54 (72%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 171
+TA+ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 381 NTAVAEVFSRIDHKFDLMYSKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At1g50010.1 68414.m05612 tubulin alpha-2/alpha-4 chain (TUA2)
identical to tubulin alpha-2/alpha-4 chain SP|P29510
GB:P29510 from [Arabidopsis thaliana]
Length = 450
Score = 63.3 bits (147), Expect = 6e-11
Identities = 24/54 (44%), Positives = 39/54 (72%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 171
ST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 381 STSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At1g04820.1 68414.m00478 tubulin alpha-2/alpha-4 chain (TUA4)
nearly identical to SP:P29510 Tubulin alpha-2/alpha-4
chain from [Arabidopsis thaliana]
Length = 450
Score = 63.3 bits (147), Expect = 6e-11
Identities = 24/54 (44%), Positives = 39/54 (72%)
Frame = +1
Query: 10 STAIQELFKRISEQFTAMFRRKAFLHWYTGEGMDEMEFTEAESNMNDLVSEYQQ 171
ST++ E+F RI +F M+ ++AF+HWY GEGM+E EF+EA ++ L +Y++
Sbjct: 381 STSVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEE 434
>At2g42840.2 68415.m05305 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 276 SPNPHTHPATCSS*MSHP 329
+P PHT P C S SHP
Sbjct: 97 TPTPHTPPCNCGSPPSHP 114
>At2g42840.1 68415.m05304 protodermal factor 1 (PDF1) identical to
protodermal factor 1 [Arabidopsis thaliana]
gi|4929130|gb|AAD33869
Length = 306
Score = 27.9 bits (59), Expect = 2.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 276 SPNPHTHPATCSS*MSHP 329
+P PHT P C S SHP
Sbjct: 97 TPTPHTPPCNCGSPPSHP 114
>At2g03690.1 68415.m00328 coenzyme Q biosynthesis Coq4 family
protein / ubiquinone biosynthesis Coq4 family protein
contains Pfam profile PF05019: Coenzyme Q (ubiquinone)
biosynthesis protein Coq4
Length = 226
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = -3
Query: 156 DEIVHVALRLRELH-LVHALAGVP 88
DE+ +VA R RE+H L H L G+P
Sbjct: 114 DELAYVATRAREVHDLWHTLFGLP 137
>At2g26890.1 68415.m03226 DNAJ heat shock N-terminal domain-containing
protein contains Pfam profile PF00226: DnaJ domain
Length = 2554
Score = 26.6 bits (56), Expect = 6.4
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Frame = -3
Query: 153 EIVHVALRLRE--LHLVHALAGVPVQESLASEHSGELFRDALEQLL 22
+++H A RE LH+++ALA P A++H G ++ LE LL
Sbjct: 2083 QMLHSAPSFREGALHVLYALASTPELAWAAAKHGGVVY--ILELLL 2126
>At3g15410.1 68416.m01955 leucine-rich repeat family protein
contains leucine rich-repeat (LRR) domains Pfam:PF00560,
INTERPRO:IPR001611; contains similarity to Hcr2-5D
[Lycopersicon esculentum] gi|3894393|gb|AAC78596;
identical to leucine-rich repeat protein [Arabidopsis
thaliana] gi|2760084|emb|CAA76000
Length = 584
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 137 LSASVNSISSMPSPVYQCKKALRLNIAVN 51
L A+ N ISS+P + C K +L++ N
Sbjct: 142 LKATNNQISSLPEDMVNCSKLSKLDVEGN 170
>At1g14850.1 68414.m01776 non-repetitive/WGA-negative nucleoporin
family protein contains Pfam profile: PF03177
non-repetitive/WGA-negative nucleoporin
Length = 1464
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 141 VALRLRELHLVHALAGVPVQESLASEHSGELFRDALE 31
V R +L A+ +P+Q++ A + +G+ F D L+
Sbjct: 929 VCKRFEDLRFYEAVVCLPLQKAQALDPAGDAFNDQLD 965
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,063,597
Number of Sequences: 28952
Number of extensions: 82221
Number of successful extensions: 279
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 605614832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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