Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K13
(213 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 29 0.11
SPBC3F6.05 |rga1||GTPase activating protein Rga1|Schizosaccharom... 25 1.8
SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr ... 23 4.2
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 23 5.5
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 23 5.5
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c... 23 7.3
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 23 7.3
SPAC4F10.18 |||WD repeat protein, human NUP37 family|Schizosacch... 23 7.3
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc... 23 7.3
SPAC5D6.06c |||UDP-GlcNAc transferase associated protein Alg14|S... 23 7.3
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce... 23 7.3
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 23 7.3
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 23 7.3
SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3 |Schizos... 23 7.3
SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S... 22 9.6
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 22 9.6
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 28.7 bits (61), Expect = 0.11
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +2
Query: 131 GHNGAVRFIVHSGTGPAFLTCSDDYR 208
GH+G VR I T P F++ DDY+
Sbjct: 51 GHDGPVRGIAFHPTQPLFVSGGDDYK 76
Score = 23.0 bits (47), Expect = 5.5
Identities = 15/33 (45%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +2
Query: 107 SRCQLISL-GHNGAVRFIVHSGTGPAFLTCSDD 202
SR L SL GH VR P L+CSDD
Sbjct: 84 SRKLLFSLCGHMDYVRVCTFHHEYPWILSCSDD 116
>SPBC3F6.05 |rga1||GTPase activating protein
Rga1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1150
Score = 24.6 bits (51), Expect = 1.8
Identities = 13/35 (37%), Positives = 20/35 (57%)
Frame = -1
Query: 201 SSLHVRKAGPVPECTMNRTAPLCPREISWHRLALL 97
+SL K P+ + T+N+ PLC + + RL LL
Sbjct: 146 NSLVASKFFPIDDPTLNKQVPLCETDY-FRRLDLL 179
>SPBC27B12.05 |||WD repeat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 391
Score = 23.4 bits (48), Expect = 4.2
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Frame = -1
Query: 141 PLCPREISWHRLALLEC--QVQRDVVASSREQ 52
P+ PR + HR+ ++EC ++Q V AS Q
Sbjct: 270 PITPRFQALHRINMIECIPELQSVVCASQSGQ 301
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 23.0 bits (47), Expect = 5.5
Identities = 15/52 (28%), Positives = 19/52 (36%)
Frame = +2
Query: 41 RLRSCSRDEATTSLCTWHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCS 196
RL + D + TW R + Q I GH A + P FL S
Sbjct: 228 RLATAIDDNRNPIILTWDLRQPTVPQNILTGHQKAALSLSWCPEDPTFLLSS 279
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = +3
Query: 48 VLVPAMRQRR-LFVLGTLEALVDAN*FLWD 134
V V R RR LF+ G + + ++N WD
Sbjct: 925 VCVSLSRARRGLFIFGNAQLVAESNPLWWD 954
>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 204
Score = 22.6 bits (46), Expect = 7.3
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = -1
Query: 129 REISWHRLALLECQV 85
R IS LALLECQ+
Sbjct: 94 RPISLGELALLECQI 108
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 131 GHNGAVRFIVHSGTGPAFLTCSDDYR 208
GH G V + S G L+ SDD R
Sbjct: 43 GHTGCVNTLDWSADGEFLLSGSDDTR 68
>SPAC4F10.18 |||WD repeat protein, human NUP37
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 391
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +2
Query: 86 TWHSRSASRCQLISLGHNGAV 148
TW S+S S L+++GH+ +
Sbjct: 20 TWCSQSPSCSNLLAIGHDTGI 40
>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 3|||Manual
Length = 111
Score = 22.6 bits (46), Expect = 7.3
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 5/44 (11%)
Frame = -1
Query: 195 LHVRKAGPVPEC-----TMNRTAPLCPREISWHRLALLECQVQR 79
LH++K G +P C + L PRE + RL+ + +VQR
Sbjct: 33 LHIKKLGTIPRCGDTGVPLQGIPALRPREFA--RLSHNQKKVQR 74
>SPAC5D6.06c |||UDP-GlcNAc transferase associated protein
Alg14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = +1
Query: 148 SIHSTFWNRSGFPDV 192
SI FWN G PDV
Sbjct: 121 SISVIFWNPFGIPDV 135
>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1610
Score = 22.6 bits (46), Expect = 7.3
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 83 KETSLPHRGNKNVIFRVVEYRLS 15
KE +P KN++F +EY L+
Sbjct: 684 KEILVPEETIKNILFTTLEYFLT 706
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 22.6 bits (46), Expect = 7.3
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +2
Query: 14 SSSDIQPHGRLRSCSRDEATTSLCTWHSRSASRCQLISLGHNGAVR 151
SSS + R RS SR + S +SRS S + ++ H +R
Sbjct: 631 SSSYSSTYSRGRSYSRSTRSYSKSRSYSRSRSVTPINNINHKKYIR 676
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 22.6 bits (46), Expect = 7.3
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 151 SNCSVVSQRNQLASTSASRVPSTKRRRCLIAGTRT 47
++C++ S A T ++ ST CLI+ RT
Sbjct: 331 ASCNIFSPHLIHAGTKFLKIDSTPSTPCLISVVRT 365
>SPBC15C4.06c ||SPBC21H7.01c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 22.6 bits (46), Expect = 7.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Frame = -2
Query: 92 AKYKETSLPHRGNKNVIFRVVEY 24
+ Y + L + GN ++I VEY
Sbjct: 151 SNYVSSGLSYYGNSSIIMNAVEY 173
>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
L34|Schizosaccharomyces pombe|chr 1|||Manual
Length = 112
Score = 22.2 bits (45), Expect = 9.6
Identities = 6/12 (50%), Positives = 9/12 (75%)
Frame = -1
Query: 195 LHVRKAGPVPEC 160
LH++K G +P C
Sbjct: 33 LHIKKLGTIPRC 44
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 22.2 bits (45), Expect = 9.6
Identities = 8/18 (44%), Positives = 14/18 (77%)
Frame = -2
Query: 71 LPHRGNKNVIFRVVEYRL 18
LPH+ +KN+++R + RL
Sbjct: 34 LPHQDSKNLLYRQICGRL 51
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 886,626
Number of Sequences: 5004
Number of extensions: 14222
Number of successful extensions: 49
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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