Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K13
(213 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0003 + 30921197-30921388,30921514-30921632,30921742-309218... 40 2e-04
07_03_1562 - 27738369-27738568,27738767-27738962,27739079-277392... 30 0.29
07_01_1005 + 8509777-8509968,8510059-8510205,8510326-8510544,851... 29 0.51
01_05_0323 - 20934429-20934447,20934658-20934774,20934815-209349... 28 1.2
03_03_0256 + 15898702-15900420 27 2.7
01_06_1166 - 35059844-35060019,35060203-35060590,35061048-35061305 26 3.6
01_01_0974 + 7678211-7678276,7678974-7679063,7679144-7679255,767... 26 3.6
01_01_0112 - 838809-839748,839781-839908,840203-840274,840306-84... 26 3.6
11_06_0027 + 19363678-19363698,19364442-19364484,19366240-193662... 26 4.8
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155... 26 4.8
09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190 25 6.3
06_01_1006 + 7836366-7836460,7836568-7836626,7836877-7836961,783... 25 6.3
03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584 25 6.3
03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964 25 6.3
03_05_0621 - 26198985-26199020,26199539-26199652,26200260-262006... 25 6.3
08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119 25 8.3
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516... 25 8.3
>03_06_0003 +
30921197-30921388,30921514-30921632,30921742-30921811,
30922078-30922161,30922258-30922344,30922431-30922501,
30922648-30922702,30923374-30923509,30925009-30925103,
30925203-30925357,30925435-30925543,30925761-30925817,
30925913-30926027,30926177-30926264,30926738-30927501,
30927600-30927688,30928315-30928422,30928550-30928657,
30928887-30928977,30929235-30929287,30929557-30929712,
30930763-30930825,30931491-30931535,30932075-30932130,
30933051-30933132,30933238-30933354,30933428-30933530,
30933912-30934062,30934180-30934417,30934564-30934764,
30934850-30934935,30935036-30935135
Length = 1347
Score = 40.3 bits (90), Expect = 2e-04
Identities = 17/46 (36%), Positives = 25/46 (54%)
Frame = +2
Query: 56 SRDEATTSLCTWHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTC 193
S DE + + W + +A + GH GA R++ HS PAF+TC
Sbjct: 403 STDEQNSEVVVWDALTAENVARLPSGHTGAPRWLGHSPAEPAFVTC 448
>07_03_1562 - 27738369-27738568,27738767-27738962,27739079-27739230,
27739775-27739832,27739923-27740038,27740117-27740237,
27740348-27740635,27740817-27740987,27741091-27741741,
27742515-27742676,27742764-27743904,27743992-27744152,
27744239-27744564,27745678-27745825
Length = 1296
Score = 29.9 bits (64), Expect = 0.29
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Frame = -3
Query: 172 CSRMYYESNCSVVSQRN-QLASTSASRVPS-TKRRRCLIA 59
CSR Y CS S+ N Q+ T+A PS R C IA
Sbjct: 929 CSRYLYSIKCSTFSEANLQILFTAAESAPSEVVRSNCTIA 968
>07_01_1005 +
8509777-8509968,8510059-8510205,8510326-8510544,
8510652-8510761,8511337-8511391,8511447-8511631,
8512537-8512599,8513713-8513782,8514159-8514242,
8515925-8516159,8516213-8516517
Length = 554
Score = 29.1 bits (62), Expect = 0.51
Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +2
Query: 32 PHGRLRSCSRDEATTSLCTW-HSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
P G+L + + ++TT++ W +S C GH V+ + S +G TCS D
Sbjct: 82 PDGKLLATASFDSTTAI--WEYSGGDFECVATLEGHENEVKSVSWSASGSLLATCSRD 137
>01_05_0323 -
20934429-20934447,20934658-20934774,20934815-20934964,
20935578-20935828,20936403-20936449,20936852-20936976,
20937039-20937154,20937194-20937284,20937772-20937893,
20938667-20938894,20938990-20939221,20941598-20941797
Length = 565
Score = 27.9 bits (59), Expect = 1.2
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +2
Query: 50 SCSRDEATTSLCTWHSRSASRCQLI 124
SC+RD+A S+ TW S+S C L+
Sbjct: 472 SCNRDDA--SILTWESQSEWACSLV 494
>03_03_0256 + 15898702-15900420
Length = 572
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +2
Query: 89 WHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
W + C +GH+ AVR I S G FL+ D
Sbjct: 310 WDVLESRTCMRTYMGHSKAVRDISFSNDGTKFLSAGYD 347
>01_06_1166 - 35059844-35060019,35060203-35060590,35061048-35061305
Length = 273
Score = 26.2 bits (55), Expect = 3.6
Identities = 15/28 (53%), Positives = 19/28 (67%)
Frame = -3
Query: 121 QLASTSASRVPSTKRRRCLIAGTRT*SS 38
+LA +AS PST+RRRCL A R S+
Sbjct: 35 RLACATASS-PSTRRRRCLDAPLRALSA 61
>01_01_0974 +
7678211-7678276,7678974-7679063,7679144-7679255,
7679959-7679986,7680163-7680261,7680614-7680683,
7680765-7680799,7680895-7680969,7681054-7681149,
7681376-7681439,7682273-7682358,7682800-7682860,
7682956-7683020,7683255-7683360,7684142-7684230,
7684353-7684515
Length = 434
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 74 TSLCTWHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
T+ ++ +R +++ GH AV I +S TG F+T S D
Sbjct: 250 TNCYSFDARKLDEAKVVHKGHVSAVMDIDYSPTGREFVTGSYD 292
>01_01_0112 -
838809-839748,839781-839908,840203-840274,840306-840374,
840634-840698,840732-840907,841006-841757
Length = 733
Score = 26.2 bits (55), Expect = 3.6
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 50 SCSRDEATTSLCTWHSRSASRCQLISLGHNGAVR 151
SC+ T +C+ ++S SR + +LG G VR
Sbjct: 329 SCTLAAFTNEICSGPTKSNSRYRYFTLGMTGIVR 362
>11_06_0027 +
19363678-19363698,19364442-19364484,19366240-19366276,
19366359-19366602,19366749-19366765,19366901-19366986,
19367347-19367378,19367455-19367615,19367722-19367818,
19367894-19368085,19368172-19368233,19368302-19368448,
19368776-19369589
Length = 650
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +2
Query: 41 RLRSCSRDEATTSLCTWH 94
R SC D+ +TS CT+H
Sbjct: 211 RCESCMNDQKSTSKCTFH 228
>05_04_0226 +
19215091-19215172,19215281-19215394,19215508-19215590,
19215682-19215820,19215862-19216191,19216414-19216693,
19216795-19216956,19217134-19217349,19217458-19217495,
19217597-19217760,19217833-19217946,19218042-19218083,
19218180-19218983
Length = 855
Score = 25.8 bits (54), Expect = 4.8
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 124 NQLASTSASRVPSTKRRRCLIAGTRT*SSVWL 29
N+L+S S S V T R L+ G + S +WL
Sbjct: 389 NELSSRSHSLVKVTVRSEHLVTGQKWRSHIWL 420
>09_01_0139 - 2074193-2077146,2077549-2078043,2078983-2079190
Length = 1218
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 134 HNGAVRFIVHSGTGPAFLTCSDDYR 208
H+G VR + T P F++ DDY+
Sbjct: 50 HDGPVRGVHFHATQPLFVSGGDDYK 74
>06_01_1006 +
7836366-7836460,7836568-7836626,7836877-7836961,
7837349-7837496,7837774-7837986,7838403-7838537,
7838659-7838790,7838884-7839099,7839212-7839336,
7839787-7839844,7839977-7840087
Length = 458
Score = 25.4 bits (53), Expect = 6.3
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 42 DYVLVPAMRQRRLFVLGTLEAL 107
DY +VP R R + VLGT+ A+
Sbjct: 287 DYQIVPGFRVRIIPVLGTIPAI 308
>03_05_0887 - 28527602-28530555,28531296-28531790,28532377-28532584
Length = 1218
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 134 HNGAVRFIVHSGTGPAFLTCSDDYR 208
H+G VR + T P F++ DDY+
Sbjct: 50 HDGPVRGVHFHATQPLFVSGGDDYK 74
>03_05_0886 - 28516210-28519163,28519577-28520071,28520757-28520964
Length = 1218
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 134 HNGAVRFIVHSGTGPAFLTCSDDYR 208
H+G VR + T P F++ DDY+
Sbjct: 50 HDGPVRGVHFHATQPLFVSGGDDYK 74
>03_05_0621 -
26198985-26199020,26199539-26199652,26200260-26200623,
26201232-26201527
Length = 269
Score = 25.4 bits (53), Expect = 6.3
Identities = 17/46 (36%), Positives = 20/46 (43%)
Frame = +2
Query: 65 EATTSLCTWHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
+AT L W R ASR GH G + + G F T SDD
Sbjct: 116 DATVRL--WDIRIASRAVRTYHGHEGDINSVKFFPDGQRFGTGSDD 159
>08_02_0655 + 19738334-19739385,19739501-19739745,19740094-19740119
Length = 440
Score = 25.0 bits (52), Expect = 8.3
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = +2
Query: 38 GRLRSCSRDEATTSLC 85
G +R+CSR+E T+LC
Sbjct: 113 GLVRACSREEDMTTLC 128
>07_01_0684 -
5161218-5161427,5161509-5161616,5162217-5162390,
5162515-5162643,5162722-5163009,5163114-5163346,
5164235-5165060
Length = 655
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = -1
Query: 195 LHVRKAGPVPECTMNRTAPLCPREISWH 112
L A E + + TAP CP IS H
Sbjct: 130 LRTAAAAAAEEASSSSTAPTCPTSISVH 157
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,055,112
Number of Sequences: 37544
Number of extensions: 103087
Number of successful extensions: 318
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 318
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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