Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K13
(213 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23517| Best HMM Match : WD40 (HMM E-Value=0) 31 0.19
SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1) 29 0.76
SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34) 27 1.8
SB_42394| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_5441| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 1.8
SB_13961| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.3
SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24) 27 3.1
SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0) 27 3.1
SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0) 26 4.1
SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 4.1
SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18) 26 4.1
SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 5.4
SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024) 26 5.4
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05) 26 5.4
SB_34530| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 7.1
SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53) 25 7.1
SB_54204| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026) 25 9.4
SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30) 25 9.4
SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 9.4
>SB_23517| Best HMM Match : WD40 (HMM E-Value=0)
Length = 860
Score = 30.7 bits (66), Expect = 0.19
Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Frame = +2
Query: 86 TWHSRSASRCQLISL-GHNGAVRFIVHSGTGPAFLTCSDD 202
TWH S Q L GH GAVR + + G LTC D
Sbjct: 553 TWHGASLPSKQTGLLQGHQGAVRAVRFNSDGNYCLTCGSD 592
>SB_50539| Best HMM Match : IL17 (HMM E-Value=4.1)
Length = 456
Score = 28.7 bits (61), Expect = 0.76
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +2
Query: 32 PHGRLRSCSRDEATTSLCTWHSR 100
P+ R+ CSRD +C W R
Sbjct: 218 PYKRIHRCSRDNTENQICDWSKR 240
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/29 (34%), Positives = 14/29 (48%)
Frame = +2
Query: 32 PHGRLRSCSRDEATTSLCTWHSRSASRCQ 118
P+ R+ CSRD +C W R + Q
Sbjct: 187 PYKRIHRCSRDNTENQICDWVKRFPTTVQ 215
>SB_51630| Best HMM Match : Fz (HMM E-Value=3.3e-34)
Length = 1120
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = +2
Query: 95 SRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCS 196
S+++++ L+SL NG ++F+ S GP + S
Sbjct: 145 SQNSNQFFLLSLSQNGNIQFLFQSARGPGVIIIS 178
>SB_42394| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 64
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +2
Query: 8 ALSSSDIQPHGRLRSCSRDEATTSLCTWHSRSASRCQLI--SLGHNGAVRFI 157
AL+++D+QP G C R + ++ +W A C +LG N +R +
Sbjct: 6 ALATADVQPKGPCLQCFRLQIDSNDTSWSMSVAHECCFYEHALGENIDLRLL 57
>SB_5441| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = +2
Query: 8 ALSSSDIQPHGRLRSCSRDEATTSLCTWHSRSASRCQLISLGHNGAVRFIVHSGT 172
A +S Q HGR C +D +C + RC + A RF +GT
Sbjct: 205 ACASEKCQEHGRTSCCDQDCVHMLVCLHDGETPYRCDRV---FGDASRFTFRAGT 256
>SB_13961| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +2
Query: 131 GHNGAVRFIVHSGTGPAFLTCSDDYR 208
G +GA +I H TG C DDY+
Sbjct: 27 GADGASCYIYHGVTGTCHSECGDDYK 52
>SB_56096| Best HMM Match : fn3 (HMM E-Value=1.3e-24)
Length = 1065
Score = 26.6 bits (56), Expect = 3.1
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -3
Query: 202 VVAARQESRTCSRMYYESNCSV-VSQRNQLASTSASRVPSTKRRR 71
V+ RQE +YY S CS +SQ ++ AS S S T R
Sbjct: 656 VIIPRQEHPATISVYYASTCSSGLSQSSKAASLSHSSALDTDDTR 700
>SB_42598| Best HMM Match : CtaG_Cox11 (HMM E-Value=0)
Length = 1498
Score = 26.6 bits (56), Expect = 3.1
Identities = 22/68 (32%), Positives = 28/68 (41%)
Frame = +2
Query: 2 HEALSSSDIQPHGRLRSCSRDEATTSLCTWHSRSASRCQLISLGHNGAVRFIVHSGTGPA 181
H ALS DI P G L + E L ++ S GH+ AV + S +G
Sbjct: 1189 HWALSL-DISPKGHLIAIGTQERLIKLMDYNEGSFQDFT----GHSDAVSEVRFSPSGHL 1243
Query: 182 FLTCSDDY 205
TCS Y
Sbjct: 1244 LYTCSHGY 1251
>SB_31652| Best HMM Match : Peptidase_C2 (HMM E-Value=0)
Length = 1133
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 47 RSCSRDEATTSLCTWHSRSASRCQLISLG 133
+ C + TSLC W++ +LIS+G
Sbjct: 1098 KRCRKTTLVTSLCMWNAHRKMARRLISVG 1126
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/25 (36%), Positives = 14/25 (56%)
Frame = +2
Query: 2 HEALSSSDIQPHGRLRSCSRDEATT 76
H+ ++ + PH R+ SC D TT
Sbjct: 746 HDLIAVGTVYPHTRIDSCRTDVPTT 770
>SB_15809| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 935
Score = 26.2 bits (55), Expect = 4.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 141 PLCPREISWHRLALLECQVQRDVVASSREQERNL 40
P C R+ H L + +RDV+A +RE+ NL
Sbjct: 853 PGCKRDEINHGLQVFRLLKERDVIAGNREKIGNL 886
>SB_215| Best HMM Match : ALG3 (HMM E-Value=0.18)
Length = 521
Score = 26.2 bits (55), Expect = 4.1
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 59 RDEATTSLCTWHSRSASR 112
R +T S+CTWHS + +R
Sbjct: 213 RTPSTCSVCTWHSSNIAR 230
>SB_42659| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 5834
Score = 25.8 bits (54), Expect = 5.4
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 187 QESRTCSRMYYESNCSVVSQRNQLASTSAS 98
++ RTC+ YY ++CS+ + +T AS
Sbjct: 2520 RDCRTCTSGYYGTDCSIAATSRGPGTTIAS 2549
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -3
Query: 178 RTCSRMYYESNCSVVS 131
RTCS YY +CSVV+
Sbjct: 676 RTCSAGYYGLDCSVVT 691
>SB_44425| Best HMM Match : SAM_1 (HMM E-Value=0.00024)
Length = 414
Score = 25.8 bits (54), Expect = 5.4
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -1
Query: 165 ECTMNRTAPLCPREISWHRLALLECQVQRDVVASSREQERNLPC 34
E T + LCP L + QV R V S Q+R +PC
Sbjct: 247 EETFEKQLKLCPEVRELKVLRPTQRQVPRGRVKSMEGQKRKIPC 290
>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
Length = 2200
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 95 SRSASRC-QLISLGHNGAVRFIVHSGTGPAFLTCSDDY 205
SR +SRC +L H+ F + P L C DDY
Sbjct: 1865 SRYSSRCRELFKDEHSPLAPFFNITNPRPFMLACEDDY 1902
>SB_34530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 283
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 131 GHNGAVRFIVHSGTGPAFLTCSDDYR 208
G G R+ + GTGP T S YR
Sbjct: 171 GGTGPCRYTLSGGTGPCRYTLSGGYR 196
>SB_4342| Best HMM Match : KA1 (HMM E-Value=0.53)
Length = 327
Score = 25.4 bits (53), Expect = 7.1
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 8 ALSSSDIQPHGRLRSCSRDEATTSL 82
+L+S +Q HGRL +C + T +L
Sbjct: 175 SLNSLRVQDHGRLVACGSHDGTVTL 199
>SB_54204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = +2
Query: 17 SSDIQPHGRLRSCSRDEATTSLCTWHSRSASRCQLISLGHNGAVRFIV 160
+S + P + S+ TT L + + S + SLG NG VR V
Sbjct: 139 ASPVPPRKENKFLSQQSLTTGLKSTLLKMHSSLNMQSLGPNGTVRICV 186
>SB_27474| Best HMM Match : MANEC (HMM E-Value=0.0026)
Length = 3342
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 89 WHSRSASRCQLISLGHN 139
WH +SAS L GHN
Sbjct: 1408 WHGKSASEINLSQSGHN 1424
>SB_14111| Best HMM Match : WD40 (HMM E-Value=6.2e-30)
Length = 1093
Score = 25.0 bits (52), Expect = 9.4
Identities = 17/53 (32%), Positives = 22/53 (41%)
Frame = +2
Query: 44 LRSCSRDEATTSLCTWHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
L SCS D S+ W + C H GAV+ + S G L+C D
Sbjct: 220 LASCSMDN---SVRVWDTYLNGICVKSHTFHGGAVKDVKWSPGGMQLLSCGYD 269
>SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1681
Score = 25.0 bits (52), Expect = 9.4
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = -1
Query: 132 PREISWHRLALLECQVQRDVVASSREQ 52
P E+S + LL + D++ASSR+Q
Sbjct: 336 PYEVSQRQPTLLRTAITNDLLASSRKQ 362
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,991,345
Number of Sequences: 59808
Number of extensions: 117588
Number of successful extensions: 356
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 356
length of database: 16,821,457
effective HSP length: 49
effective length of database: 13,890,865
effective search space used: 291708165
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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