Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K13
         (213 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical pr...    59   4e-10
Z81486-5|CAB03987.1|  570|Caenorhabditis elegans Hypothetical pr...    28   1.0  
AL117195-1|CAB60764.2|  368|Caenorhabditis elegans Hypothetical ...    27   2.4  
U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical p...    26   3.2  
Z81478-4|CAB03935.2|  235|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical pr...    25   5.5  
Z49969-5|CAA90269.1|  224|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z74031-5|CAA98457.1|  225|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>Z68315-3|CAA92670.1|  430|Caenorhabditis elegans Hypothetical
           protein F28C6.3 protein.
          Length = 430

 Score = 59.3 bits (137), Expect = 4e-10
 Identities = 25/50 (50%), Positives = 37/50 (74%)
 Frame = +2

Query: 62  DEATTSLCTWHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDDYRA 211
           DE + S+C+W +R++ R +L++LGH  A R  VHS + PAF+T SDD+RA
Sbjct: 369 DEKSGSMCSWDARNSDRKRLLALGHTSACRTFVHSPSMPAFMTGSDDHRA 418



 Score = 25.8 bits (54), Expect = 4.2
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 21  AIFNHTEDYVLVP 59
           A FNH EDYVL P
Sbjct: 356 ASFNHNEDYVLFP 368


>Z81486-5|CAB03987.1|  570|Caenorhabditis elegans Hypothetical
           protein C53A5.6 protein.
          Length = 570

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 5   EALSSSDIQPHGRLRSCSRDEATTSLCTWHSRSASRCQLISLG 133
           +++ S  + P  +  + S DE T S CT HS+    C+  ++G
Sbjct: 71  KSMQSGGVAPQAQSTN-SLDEGTCSECTLHSKKLRICKTCAVG 112


>AL117195-1|CAB60764.2|  368|Caenorhabditis elegans Hypothetical
           protein Y57A10A.2 protein.
          Length = 368

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
 Frame = +2

Query: 29  QPHGRLRSCS--RDEATTSLCTWHSRSASRCQLISLGHNGA 145
           Q  GR R C    ++ T  L T HS SA RC        GA
Sbjct: 99  QLDGRNRICKYESEDGTLQLGTAHSESAKRCSASDSDQGGA 139


>U58755-10|AAB00699.1| 2761|Caenorhabditis elegans Hypothetical
            protein C34D4.14 protein.
          Length = 2761

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = -3

Query: 205  VVVAARQESRTCSRMYYESNC-SVVSQRNQLASTSASRVPST 83
            +VVAAR     CSR+ Y+  C   V  RN     +A  V  T
Sbjct: 2247 LVVAARSLPEWCSRLVYKYPCLFTVETRNMYMQATAFGVSRT 2288


>Z81478-4|CAB03935.2|  235|Caenorhabditis elegans Hypothetical
           protein C31G12.4 protein.
          Length = 235

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 178 RTCSRMYYESNCSVVSQRNQLAS--TSASRVPSTKRRR 71
           +TCSR   ESN   V+   QL++  TS +++  T+ +R
Sbjct: 172 KTCSRTVLESNDVAVATCRQLSAPGTSQAQLEPTREKR 209


>Z82269-3|CAB05207.2| 1319|Caenorhabditis elegans Hypothetical
           protein F52G2.2a protein.
          Length = 1319

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 157 YESNCSVVSQRNQLASTSASRVPSTKR 77
           YE N   +S++N L + S SR+P+  R
Sbjct: 631 YEDNIYQLSRKNGLGAKSISRLPNEPR 657


>Z82269-2|CAJ76945.1| 1129|Caenorhabditis elegans Hypothetical
           protein F52G2.2b protein.
          Length = 1129

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 157 YESNCSVVSQRNQLASTSASRVPSTKR 77
           YE N   +S++N L + S SR+P+  R
Sbjct: 441 YEDNIYQLSRKNGLGAKSISRLPNEPR 467


>Z49969-5|CAA90269.1|  224|Caenorhabditis elegans Hypothetical
           protein W01C9.5 protein.
          Length = 224

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 181 SRTCSRMYYESNCSVVSQRNQLASTSASRVPSTKR 77
           +R  SR+  ESNC +VSQ  Q A+ S S  P+  R
Sbjct: 49  TRCFSRL--ESNCPIVSQCFQSATYSLSTNPNGVR 81


>Z74031-5|CAA98457.1|  225|Caenorhabditis elegans Hypothetical
           protein F32D8.5a protein.
          Length = 225

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 14/44 (31%), Positives = 19/44 (43%)
 Frame = +2

Query: 47  RSCSRDEATTSLCTWHSRSASRCQLISLGHNGAVRFIVHSGTGP 178
           + C R   TTS C       S+     LGH+     ++H GT P
Sbjct: 19  QKCVRSLGTTSKCNVEVLPLSKIDKDDLGHS----ILIHKGTLP 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,048,618
Number of Sequences: 27780
Number of extensions: 83267
Number of successful extensions: 267
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)