Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K13
(213 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60940.2 68418.m07645 transducin family protein / WD-40 repea... 43 3e-05
At5g60940.1 68418.m07644 transducin family protein / WD-40 repea... 43 3e-05
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 29 0.32
At5g04400.1 68418.m00432 no apical meristem (NAM) family protein... 29 0.56
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 28 0.97
At2g14260.2 68415.m01594 proline iminopeptidase identical to GP:... 27 1.3
At2g14260.1 68415.m01595 proline iminopeptidase identical to GP:... 27 1.3
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 27 1.7
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 27 1.7
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 27 1.7
At4g32990.1 68417.m04692 transducin family protein / WD-40 repea... 27 1.7
At5g04690.1 68418.m00477 expressed protein 26 3.0
At2g20300.1 68415.m02371 protein kinase family protein contains ... 26 3.0
At2g26060.1 68415.m03129 transducin family protein / WD-40 repea... 26 3.9
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 25 5.2
At3g53090.1 68416.m05851 HECT-domain-containing protein / ubiqui... 25 5.2
At5g37530.1 68418.m04520 thiF family protein similar to SP|P3013... 25 6.9
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 25 9.1
>At5g60940.2 68418.m07645 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 337
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +2
Query: 56 SRDEATTSLCTWHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
S DEA+ + TW +R+A + HNGA R+I HS F+TC D
Sbjct: 279 SIDEASNEVVTWDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGID 327
>At5g60940.1 68418.m07644 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to cleavage stimulation factor 50K chain Homo
sapiens, PIR:A45142
Length = 429
Score = 42.7 bits (96), Expect = 3e-05
Identities = 20/49 (40%), Positives = 27/49 (55%)
Frame = +2
Query: 56 SRDEATTSLCTWHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
S DEA+ + TW +R+A + HNGA R+I HS F+TC D
Sbjct: 371 SIDEASNEVVTWDARTADKVAKWPSNHNGAPRWIEHSPVESVFVTCGID 419
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 29.5 bits (63), Expect = 0.32
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = +2
Query: 89 WHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
W ++ +C +GH AVR I S G FLT D
Sbjct: 310 WDVYNSGKCMRTYMGHAKAVRDICFSNDGSKFLTAGYD 347
>At5g04400.1 68418.m00432 no apical meristem (NAM) family protein
ontains Pfam PF02365: No apical meristem (NAM) protein
Length = 395
Score = 28.7 bits (61), Expect = 0.56
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 198 SLHVRKAGPVPECTMNRTAPL 136
++HV GP+P C +N+ APL
Sbjct: 202 AIHVPDDGPLPLCVLNKEAPL 222
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 27.9 bits (59), Expect = 0.97
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +2
Query: 26 IQPHGRLRSCSRDEATTSLCTWHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
+ P GR + ++ T + W S +RC +GHN V + +SG G + S D
Sbjct: 549 MSPDGRYMASGDEDGTIMM--W-DLSTARCITPLMGHNSCVWSLSYSGEGSLLASGSAD 604
>At2g14260.2 68415.m01594 proline iminopeptidase identical to
GP:1710151:U72711
Length = 329
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 127 SGTQRSSSIHSTFWNRSGFPD 189
SG + S +H+ +W +SG PD
Sbjct: 24 SGNLKVSDVHTLYWEQSGKPD 44
>At2g14260.1 68415.m01595 proline iminopeptidase identical to
GP:1710151:U72711
Length = 380
Score = 27.5 bits (58), Expect = 1.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 127 SGTQRSSSIHSTFWNRSGFPD 189
SG + S +H+ +W +SG PD
Sbjct: 75 SGNLKVSDVHTLYWEQSGKPD 95
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 89 WHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
W +R+ASR GH G V + G F T SDD
Sbjct: 232 WDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDD 269
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 89 WHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
W +R+ASR GH G V + G F T SDD
Sbjct: 170 WDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDD 207
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +2
Query: 89 WHSRSASRCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
W +R+ASR GH G V + G F T SDD
Sbjct: 232 WDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDD 269
>At4g32990.1 68417.m04692 transducin family protein / WD-40 repeat
family protein HIRA protein, Drosophila melanogaster,
PID:e1250847
Length = 318
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 4/57 (7%)
Frame = +2
Query: 44 LRSCSRDEATTSLCTWHSRSASRC-QLISL---GHNGAVRFIVHSGTGPAFLTCSDD 202
L SCS D C+ C Q +S GH+ V I + G +TCSDD
Sbjct: 154 LFSCSYDNTIKIWCSEDEDGDYNCVQTLSELNNGHSSTVWSISFNAAGDKMVTCSDD 210
>At5g04690.1 68418.m00477 expressed protein
Length = 625
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -2
Query: 188 SGKPDLFQNVL*IELLRCVPEKSVGID 108
+ KPDLF + L ++L+C+ K +GID
Sbjct: 260 ASKPDLFPDTLMGKVLKCL-SKCIGID 285
>At2g20300.1 68415.m02371 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 744
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +2
Query: 107 SRCQLISLGHNGAVRFIVHSGT 172
+RC + L HNG+V +H GT
Sbjct: 417 TRCLIYELVHNGSVESHLHEGT 438
>At2g26060.1 68415.m03129 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD40-repeat containing protein Ciao 1
(SP:O76071) [Homo sapiens]
Length = 352
Score = 25.8 bits (54), Expect = 3.9
Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +2
Query: 32 PHGRLRSCSRDEATTSLCTWHSRSAS-RCQLISLGHNGAVRFIVHSGTGPAFLTCSDD 202
P G+L + + + TT + W + + C GH V+ + + +G TCS D
Sbjct: 84 PSGQLLATASFDGTTGI--WKNYGSEFECISTLEGHENEVKSVSWNASGSCLATCSRD 139
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 131 GHNGAVRFIVHSGTGPAFLTCSDD 202
GH+ V I + G +TCSDD
Sbjct: 211 GHSSTVWSISFNAAGDKMVTCSDD 234
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 131 GHNGAVRFIVHSGTGPAFLTCSDDYRA 211
GH G V + TG +CSDD A
Sbjct: 446 GHQGEVNCVKWDPTGSLLASCSDDSTA 472
>At3g53090.1 68416.m05851 HECT-domain-containing protein /
ubiquitin-transferase family protein / IQ
calmodulin-binding motif-containing protein contains
Pfam profiles PF00632: HECT-domain
(ubiquitin-transferase), PF00612: IQ calmodulin-binding
motif
Length = 1142
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 130 GTQRSSSIHSTFWNRSGFPD 189
G++ SSIH +F N SG P+
Sbjct: 795 GSRLKSSIHVSFVNESGLPE 814
>At5g37530.1 68418.m04520 thiF family protein similar to SP|P30138
Adenylyltransferase thiF (EC 2.7.7.-) {Escherichia
coli}; contains Pfam profile PF00899: ThiF family
Length = 457
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +3
Query: 42 DYVLVPAMRQRRLFVLGTLEAL 107
DY +VP R R + VLGT+ A+
Sbjct: 286 DYQVVPGFRVRIIPVLGTIPAI 307
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 131 GHNGAVRFIVHSGTGPAFLTCSDD 202
GH GAVR + S G ++C D
Sbjct: 97 GHQGAVRGLTASTDGNVLVSCGTD 120
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,754,796
Number of Sequences: 28952
Number of extensions: 79109
Number of successful extensions: 256
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,070,560
effective HSP length: 50
effective length of database: 10,622,960
effective search space used: 212459200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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