Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K12
         (309 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    23   0.84 
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    23   0.84 
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   1.9  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     21   3.4  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   4.5  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 129 TRPTITVCYIYYNVMYH*ILLYV 197
           +R    VC++ +N+MY  I L++
Sbjct: 408 SRIVFPVCFVCFNLMYWIIYLHI 430


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 23.0 bits (47), Expect = 0.84
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +3

Query: 129 TRPTITVCYIYYNVMYH*ILLYV 197
           +R    VC++ +N+MY  I L++
Sbjct: 408 SRIVFPVCFVCFNLMYWIIYLHI 430


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 180 NGTLHYNKYNKQ 145
           N T+H N YNK+
Sbjct: 320 NNTIHNNNYNKK 331


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 21.0 bits (42), Expect = 3.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +3

Query: 126 DTRPTITVCYIYYNVM 173
           DT P + + YIY+  M
Sbjct: 116 DTEPILLIAYIYHLYM 131


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 20.6 bits (41), Expect = 4.5
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +3

Query: 129 TRPTITVCYIYYNVMY 176
           +R    VC++ +N+MY
Sbjct: 346 SRIVFPVCFVCFNLMY 361


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,479
Number of Sequences: 438
Number of extensions: 743
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6471036
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)