Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K11
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              218   3e-57
SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)              176   1e-44
SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)         36   0.026
SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)                   30   1.00 
SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)           28   5.3  
SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_2709| Best HMM Match : SBP (HMM E-Value=0.83)                       27   7.0  
SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.0  
SB_41748| Best HMM Match : Transposase_14 (HMM E-Value=0.79)           27   7.0  
SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37)               27   9.3  
SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)                      27   9.3  
SB_26951| Best HMM Match : CUB (HMM E-Value=0)                         27   9.3  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   9.3  

>SB_37381| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 413

 Score =  218 bits (532), Expect = 3e-57
 Identities = 97/116 (83%), Positives = 109/116 (93%)
 Frame = +3

Query: 39  KPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAKQP 218
           KPRG+RTARK  +HRR+Q+W DK +KKAH+GT  KANPFGGASHAKGIVLEKVGVEAKQP
Sbjct: 2   KPRGLRTARKLRSHRRDQKWHDKAYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQP 61

Query: 219 NSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGV 386
           NSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAVGDIPG+
Sbjct: 62  NSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAVGDIPGI 117


>SB_33031| Best HMM Match : Ribosomal_S12 (HMM E-Value=0)
          Length = 143

 Score =  176 bits (428), Expect = 1e-44
 Identities = 81/91 (89%), Positives = 89/91 (97%)
 Frame = +3

Query: 189 EKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAV 368
           ++ GVEAKQPNSAIRKCVRVQLIKNGKK+TAFVP DGCLN+IEENDEVL++GFGR+GHAV
Sbjct: 53  QEPGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNYIEENDEVLISGFGRRGHAV 112

Query: 369 GDIPGVRFKVVKVANVSLLALYKEKKERPRS 461
           GDIPGVRFKVVKVANVSLLAL+KEKKERPRS
Sbjct: 113 GDIPGVRFKVVKVANVSLLALFKEKKERPRS 143


>SB_54786| Best HMM Match : Ribosomal_S12 (HMM E-Value=1.4e-12)
          Length = 302

 Score = 35.5 bits (78), Expect = 0.026
 Identities = 16/39 (41%), Positives = 27/39 (69%)
 Frame = +3

Query: 174 KGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVP 290
           KG+ ++    + K+PNSA RKC  ++L  NGK ++A++P
Sbjct: 230 KGVCVKVFIRKPKKPNSAQRKCALLKL-SNGKTISAYIP 267


>SB_46453| Best HMM Match : DUF947 (HMM E-Value=0.13)
          Length = 943

 Score = 30.3 bits (65), Expect = 1.00
 Identities = 14/26 (53%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
 Frame = -3

Query: 163 APPKGFAFHLVPMW-AFLN-SLSAHR 92
           APPKG+ F +VP+W +F N S+  HR
Sbjct: 911 APPKGYRFLIVPLWRSFSNRSVFGHR 936


>SB_19664| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 632

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 17/66 (25%), Positives = 28/66 (42%)
 Frame = -3

Query: 391 NLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHLRMAEFGC 212
           N TP +        P   T+TSS  +     P++GT  +   P   + T T L   +  C
Sbjct: 476 NPTPSVESDDMDYIPTKDTSTSSTGNQCSSVPTKGTKPMRPPPGFHALTTTQLTKTDDAC 535

Query: 211 LASTPT 194
             ++P+
Sbjct: 536 EPNSPS 541


>SB_49238| Best HMM Match : Metallothionein (HMM E-Value=2.8)
          Length = 293

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 370 PTAWPLRPNPATNTSSFSSMWLRQPSRGTNA-VTFL 266
           P  W   PN  T   S    WL QP++GT+A VT+L
Sbjct: 138 PCTWLAPPNKGT---SAPVTWLAQPNKGTSAPVTWL 170



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 373 SPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAV 275
           +P  W  +PN  T   S    WL  P++GT+A+
Sbjct: 151 APVTWLAQPNKGT---SAPVTWLAPPNKGTSAI 180


>SB_34124| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 468

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 116 KSPHGYEMEGEPLRWCISC*GHRPRKS 196
           +S HG  MEG P+ W +S  G  P+ S
Sbjct: 84  RSQHGTRMEGVPVCWYVSVWGLSPQVS 110


>SB_2709| Best HMM Match : SBP (HMM E-Value=0.83)
          Length = 154

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 157 PKGFAFHLVPMWAFLNSLS 101
           PKG+ F +VP+W+ L + S
Sbjct: 10  PKGYRFQIVPLWSSLTNRS 28


>SB_48550| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 595

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 59  GAQARESSSRAAMGRQGIQKS 121
           G QARE++ R AM RQG++ +
Sbjct: 2   GRQARENTFRRAMSRQGLENT 22



 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 59  GAQARESSSRAAMGRQGIQKS 121
           G QARE++ R AM RQG++ +
Sbjct: 281 GRQARENTFRRAMSRQGLENT 301


>SB_41748| Best HMM Match : Transposase_14 (HMM E-Value=0.79)
          Length = 270

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 157 PKGFAFHLVPMWAFLNSLS 101
           PKG+ F +VP+W+ L + S
Sbjct: 10  PKGYRFQIVPLWSSLTNRS 28


>SB_33562| Best HMM Match : ATP-synt_8 (HMM E-Value=0.37)
          Length = 292

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/24 (50%), Positives = 17/24 (70%), Gaps = 2/24 (8%)
 Frame = -3

Query: 157 PKGFAFHLVPMW-AFLN-SLSAHR 92
           PKG+ F +VP+W +F N S+  HR
Sbjct: 251 PKGYRFQIVPLWTSFSNRSVFGHR 274


>SB_27475| Best HMM Match : PCMT (HMM E-Value=5.5)
          Length = 63

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 297 GCLNHIEENDEVLVAGFGRKGHA 365
           G  N +EEN  +LV G GRKG++
Sbjct: 39  GNANLLEENRLILVTGDGRKGYS 61


>SB_26951| Best HMM Match : CUB (HMM E-Value=0)
          Length = 794

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -3

Query: 343 PATNTSSFSSMWLRQPSRG-TNAVTFLPFLMSC--TRTHLRMAEFGC 212
           P T TSS SSM+++  S G   A  F+    S   TRT + +A F C
Sbjct: 711 PGTVTSSESSMYIKFHSNGNVTAAGFMATYTSAWSTRTIVLIAVFSC 757


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = -3

Query: 334  NTSSFSSMWLRQPSRGTNAVTFLPFLM-SCTRTHLRMAEFGCLASTPTFSRTMPLA 170
            NT  FS +     S G    T   F++ +CTR        GC +STP  +RT+  A
Sbjct: 1391 NTRLFSGLDKAITSSGRKPYTLYSFILKACTRA-------GCSSSTPASARTLEAA 1439


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,561,370
Number of Sequences: 59808
Number of extensions: 419149
Number of successful extensions: 1632
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1553
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1627
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)