Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K11
(519 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B) ribo... 239 8e-64
At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) simi... 230 4e-61
At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial fam... 34 0.066
At3g17900.1 68416.m02280 expressed protein 28 4.3
At2g46560.1 68415.m05808 transducin family protein / WD-40 repea... 28 4.3
At1g32960.1 68414.m04059 subtilase family protein contains simil... 28 4.3
At1g32940.1 68414.m04057 subtilase family protein contains simil... 28 4.3
At1g68190.1 68414.m07790 zinc finger (B-box type) family protein 27 5.7
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 27 7.6
At1g35560.1 68414.m04415 TCP family transcription factor, putati... 27 7.6
At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family... 27 7.6
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g... 27 7.6
>At5g02960.1 68418.m00239 40S ribosomal protein S23 (RPS23B)
ribosomal protein S23, Fragaria x ananassa, PIR:S56673
Length = 142
Score = 239 bits (585), Expect = 8e-64
Identities = 110/143 (76%), Positives = 124/143 (86%)
Frame = +3
Query: 33 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
MGK RG+ RK R QRWADK++KK+H+G WK PF G+SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKRLRINQRWADKQYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAK 59
Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 393 KVVKVANVSLLALYKEKKERPRS 461
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>At3g09680.1 68416.m01147 40S ribosomal protein S23 (RPS23A) similar
to 40S ribosomal protein S23 (S12) GB:P46297 from
[Fragaria x ananassa]
Length = 142
Score = 230 bits (563), Expect = 4e-61
Identities = 108/143 (75%), Positives = 121/143 (84%)
Frame = +3
Query: 33 MGKPRGIRTARKHVNHRREQRWADKEFKKAHMGTRWKANPFGGASHAKGIVLEKVGVEAK 212
MGK RG+ RK R QRWADK +KK++ G WK PF +SHAKGIVLEK+G+EAK
Sbjct: 1 MGKTRGMGAGRKLKQLRITQRWADKHYKKSNRGNEWK-KPFACSSHAKGIVLEKIGIEAK 59
Query: 213 QPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRF 392
QPNSAIRKC RVQLIKNGKK+ AFVP DGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRF
Sbjct: 60 QPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRF 119
Query: 393 KVVKVANVSLLALYKEKKERPRS 461
KVVKV+ VSLLAL+KEKKE+PRS
Sbjct: 120 KVVKVSGVSLLALFKEKKEKPRS 142
>At2g07675.1 68415.m00903 ribosomal protein S12 mitochondrial family
protein
Length = 125
Score = 33.9 bits (74), Expect = 0.066
Identities = 24/65 (36%), Positives = 38/65 (58%)
Frame = +3
Query: 210 KQPNSAIRKCVRVQLIKNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVR 389
K+PNSA RK +V+L N + A +P +G ++ +E+ VL+ G GR V D PGV+
Sbjct: 43 KKPNSAPRKIAKVRL-SNRHDIFAHIPGEG--HNSQEHSTVLIRG-GR----VKDSPGVK 94
Query: 390 FKVVK 404
++
Sbjct: 95 SHCIR 99
>At3g17900.1 68416.m02280 expressed protein
Length = 838
Score = 27.9 bits (59), Expect = 4.3
Identities = 14/37 (37%), Positives = 18/37 (48%)
Frame = -2
Query: 242 NTLTNG*IRLLGFNANFFEDDALSMRCTTEGVRLPSR 132
N +G LL F E D S+RC EG+ +P R
Sbjct: 441 NGQKSGTEELLSFRGVALERDRFSVRCGLEGICIPGR 477
>At2g46560.1 68415.m05808 transducin family protein / WD-40 repeat
family protein similar to CPY (GI:3096961) {Chironomus
thummi}; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies, 3 weak)|9780477|gb|BE522499.1|BE522499
Length = 2471
Score = 27.9 bits (59), Expect = 4.3
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = -3
Query: 286 TNAVTFLPFLMSCTRTHLRMAEFGCLASTPTFSRTMPLA*DAPPKGFA 143
+N T FL+ + TH+ + EFG +T T+ +P A +PP A
Sbjct: 2161 SNHPTMPLFLVGSSNTHIYLWEFGNERATATYG-VLPAANVSPPYALA 2207
>At1g32960.1 68414.m04059 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 [Oryza sativa]
Length = 777
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 96 WADKEFKKAHMGTRWKANPFGGASHAKG 179
W+ F+ A + T W+ +PFG A+G
Sbjct: 575 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 602
>At1g32940.1 68414.m04057 subtilase family protein contains
similarity to subtilase; SP1 GI:9957714 from [Oryza
sativa]
Length = 774
Score = 27.9 bits (59), Expect = 4.3
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +3
Query: 96 WADKEFKKAHMGTRWKANPFGGASHAKG 179
W+ F+ A + T W+ +PFG A+G
Sbjct: 572 WSPAAFRSAIVTTAWRTDPFGEQIFAEG 599
>At1g68190.1 68414.m07790 zinc finger (B-box type) family protein
Length = 356
Score = 27.5 bits (58), Expect = 5.7
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Frame = -3
Query: 349 PNPATNTSSFSSMWLRQP-SRGTNAVTFLPFLMSCTR 242
P PA++T SFSS P S ++F P L + TR
Sbjct: 300 PKPASSTISFSSSETDNPYSHSEEVISFCPSLSNNTR 336
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Frame = +3
Query: 258 KNGKKVTAFVPRDGCLNHIEENDEVLVAGFGRKGHAVGDIPGVRFKVV-KVANVS 419
K KK + VP+ + E D+V GF K V D+P + +VV + NVS
Sbjct: 819 KEEKKSSPKVPKKVKNQLVYEQDDVHPHGFKAKTVLVPDVPNQQIEVVIRAENVS 873
>At1g35560.1 68414.m04415 TCP family transcription factor, putative
similar to PCF2 (GI:2580440) and PCF1 (GI:2580438)
[Oryza sativa]
Length = 341
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = -3
Query: 400 TTLNLTPGMSPTAWPLRPNPATNTSSFSSMWL 305
+T + T M P W L P PA +T+ S+ W+
Sbjct: 212 STRSRTQNMIPPMWALAPTPA-STNGGSAFWM 242
>At1g21580.1 68414.m02698 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 1696
Score = 27.1 bits (57), Expect = 7.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 406 TLTTLNLTPGMSPTAWP 356
T TT+N +PG P +WP
Sbjct: 587 TKTTINTSPGKLPVSWP 603
>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
P-glycoprotein GI:4204793 from [Solanum tuberosum]
Length = 1227
Score = 27.1 bits (57), Expect = 7.6
Identities = 24/79 (30%), Positives = 31/79 (39%)
Frame = -3
Query: 409 ATLTTLNLTPGMSPTAWPLRPNPATNTSSFSSMWLRQPSRGTNAVTFLPFLMSCTRTHLR 230
A LN TP + + PL P T T+S + QP A + L S R +
Sbjct: 601 AASPNLNHTPSLPVSTKPLPELPITETTSSIHQSVNQPDTTKQAKVTVGRLYSMIRPDWK 660
Query: 229 MAEFGCLASTPTFSRTMPL 173
G L S S+ MPL
Sbjct: 661 YGLCGTLGSFIAGSQ-MPL 678
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,542,418
Number of Sequences: 28952
Number of extensions: 269630
Number of successful extensions: 700
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 947539968
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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