Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K10
         (336 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces...    26   1.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    24   7.1  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    23   9.4  
SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal prote...    23   9.4  
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c...    23   9.4  
SPBC19F5.03 |||inositol polyphosphate phosphatase |Schizosacchar...    23   9.4  

>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 567

 Score = 25.8 bits (54), Expect = 1.8
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = +1

Query: 1   ARGKHPAPMQRPSREQYAAMCARAQATGQPLPAHVFTHVNGKPTNIS 141
           A  K P    +  ++     C RA A  + L  H+ +H N KP   S
Sbjct: 55  AAKKDPNAPPQKVKQYVCETCTRAFARLEHLKRHIRSHTNEKPFTCS 101


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = +1

Query: 127 PTN-ISGRGGRRHVISWMDAPDELYFRATDSAKAARRTLSCGELRRGARA 273
           P N I G+GG   V+ WM +P E   R T     A   +   E+RR A A
Sbjct: 803 PANSIIGQGGLDRVVEWMLSP-EPRNRPTIDQILATDEVCWVEMRRKAGA 851


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 172 WMDAPDELYFRATDSAKAARRTLSCGELR 258
           +MD P ELY    +   A R  LS   LR
Sbjct: 349 FMDCPSELYQTRRELLVATRHVLSTDYLR 377


>SPBC83.02c |rpl4302|rpl43-2, rpl43, rpl37a-2|60S ribosomal protein
           L37a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 94

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 13/30 (43%), Positives = 13/30 (43%)
 Frame = -2

Query: 113 CVKTCAGSGWPVACARAHMAAYCSREGRCM 24
           C KT AG  W V  A A  A    R  R M
Sbjct: 62  CSKTLAGGAWTVTTAAATSARSTIRRLREM 91


>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 625

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 232 RTLSCGELRRGARAPWRTM 288
           + L+CG++  G  A WR +
Sbjct: 187 KVLACGDIGMGGMAEWRNI 205


>SPBC19F5.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 264 GAGALAYDVCRSACRTREG 320
           G GAL  D  R+  RTR+G
Sbjct: 441 GTGALKTDFTRTGIRTRKG 459


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,160,221
Number of Sequences: 5004
Number of extensions: 19696
Number of successful extensions: 71
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 95984434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)