Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K10
(336 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.011
SB_52712| Best HMM Match : Dynein_light (HMM E-Value=3) 27 2.9
SB_44353| Best HMM Match : GRP (HMM E-Value=4.9) 27 2.9
SB_19172| Best HMM Match : GRP (HMM E-Value=4.9) 27 2.9
SB_10490| Best HMM Match : Toxin_27 (HMM E-Value=6.4) 27 2.9
SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.9
SB_2796| Best HMM Match : RR_TM4-6 (HMM E-Value=1.9) 27 2.9
SB_4760| Best HMM Match : EGF (HMM E-Value=8.29989e-42) 27 3.8
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 27 5.0
SB_56681| Best HMM Match : adh_short (HMM E-Value=0.035) 27 5.0
SB_30752| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.6
SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42) 26 6.6
SB_51703| Best HMM Match : LRR_1 (HMM E-Value=1.9e-06) 26 6.6
SB_51279| Best HMM Match : Filament (HMM E-Value=0.092) 26 8.7
SB_48202| Best HMM Match : GARS_B (HMM E-Value=0.49) 26 8.7
SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12) 26 8.7
SB_15899| Best HMM Match : PAN (HMM E-Value=0.00033) 26 8.7
SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27) 26 8.7
SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0) 26 8.7
SB_50772| Best HMM Match : PEGSRP (HMM E-Value=8) 26 8.7
SB_44194| Best HMM Match : PEGSRP (HMM E-Value=8) 26 8.7
SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033) 26 8.7
SB_11442| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.7
>SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 35.5 bits (78), Expect = 0.011
Identities = 21/87 (24%), Positives = 41/87 (47%)
Frame = +1
Query: 22 PMQRPSREQYAAMCARAQATGQPLPAHVFTHVNGKPTNISGRGGRRHVISWMDAPDELYF 201
P Q + M A ++ +P + +H G T + R ++ ++D P+E +
Sbjct: 674 PKQAAQGKGGPVMNASSKPVQRPANVNRRSHYQGNGTPHTHRD--KNNPQYIDPPEEFLY 731
Query: 202 RATDSAKAARRTLSCGELRRGARAPWR 282
A+ + +R+TL +R+ AR PW+
Sbjct: 732 TASRKTRKSRKTLVADAVRKVARKPWK 758
>SB_52712| Best HMM Match : Dynein_light (HMM E-Value=3)
Length = 404
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +2
Query: 209 PTAPRRRGGRSAVGSCGAGRGRLGVRC 289
PT RR GG G CG GRG RC
Sbjct: 55 PTHKRRCGGGG--GGCGGGRGGGDARC 79
>SB_44353| Best HMM Match : GRP (HMM E-Value=4.9)
Length = 361
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 179 TRPTSCTSERPTAPRRRGGRSAVGSCGAGRGRLGVRC 289
T T+ T + P R GGR G C G G G C
Sbjct: 138 TATTTTTKQGPVCGRGGGGRRGGGGCCGGGGGGGGDC 174
>SB_19172| Best HMM Match : GRP (HMM E-Value=4.9)
Length = 278
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 179 TRPTSCTSERPTAPRRRGGRSAVGSCGAGRGRLGVRC 289
T T+ T + P R GGR G C G G G C
Sbjct: 55 TATTTTTKQGPVCGRGGGGRRGGGGCCGGGGGGGGDC 91
>SB_10490| Best HMM Match : Toxin_27 (HMM E-Value=6.4)
Length = 211
Score = 27.5 bits (58), Expect = 2.9
Identities = 24/62 (38%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
Frame = -2
Query: 176 IHEITCRRPPRPLIFVGLPF----TCVKTCAGSGWPVACARAHMAAYCSREGRCMGAGCL 9
+H I C P RPL VGLPF CV W +A RA + E GA L
Sbjct: 21 VHIIRCPTPVRPL--VGLPFRPHAACVHLPFVDEWELA-RRAFCRSSMRAESAATGA-VL 76
Query: 8 PR 3
PR
Sbjct: 77 PR 78
>SB_8478| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +2
Query: 209 PTAPRRRGGRSAVGSCGAGRGRLGVRC 289
PT RR GG G CG GRG RC
Sbjct: 799 PTHKRRWGGGG--GGCGGGRGGGDARC 823
>SB_2796| Best HMM Match : RR_TM4-6 (HMM E-Value=1.9)
Length = 224
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/37 (37%), Positives = 16/37 (43%)
Frame = +2
Query: 179 TRPTSCTSERPTAPRRRGGRSAVGSCGAGRGRLGVRC 289
T T+ T + P R GGR G C G G G C
Sbjct: 138 TATTTTTKQGPVCGRGGGGRRGGGGCCGGGGGGGGDC 174
>SB_4760| Best HMM Match : EGF (HMM E-Value=8.29989e-42)
Length = 240
Score = 27.1 bits (57), Expect = 3.8
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = -2
Query: 113 CVKTCAGSGWPVACARAHMAAYCSREGRCMGAGC 12
CV+T +G+G+ +C + C C+ C
Sbjct: 90 CVETLSGTGYECSCPSGYRGEVCDVIDNCLSNPC 123
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 26.6 bits (56), Expect = 5.0
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -1
Query: 174 PRDHVPPSPPTAYI 133
P H+PP+PP YI
Sbjct: 310 PNPHIPPAPPNPYI 323
>SB_56681| Best HMM Match : adh_short (HMM E-Value=0.035)
Length = 437
Score = 26.6 bits (56), Expect = 5.0
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 231 ADAQLWGVAARGAGALAYDVCRSACRTR 314
+ AQ + RG+G +D C SAC+ R
Sbjct: 305 SSAQKKKLNVRGSGKPRFDFCNSACKVR 332
>SB_30752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 215 APRRRGGRSAVGSCGAGRGRLG 280
A RRRG G CG GR LG
Sbjct: 400 ADRRRGHDRGHGCCGGGRSDLG 421
>SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)
Length = 1371
Score = 26.2 bits (55), Expect = 6.6
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +3
Query: 243 LWGVAARGAGALAYDVCRSAC 305
+W G GA YD C++ C
Sbjct: 789 MWAAKLPGEGAALYDTCKAMC 809
>SB_51703| Best HMM Match : LRR_1 (HMM E-Value=1.9e-06)
Length = 632
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -2
Query: 161 CRRPPRPLIFVGLPFTCVKTCAGSGWPVA 75
CR PP PLI +GL + + + +G P+A
Sbjct: 176 CRNPP-PLIHLGLGYNQITSISGHMTPLA 203
>SB_51279| Best HMM Match : Filament (HMM E-Value=0.092)
Length = 778
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/34 (32%), Positives = 22/34 (64%)
Frame = +3
Query: 129 DKYKRSGGTAARDLVDGRARRAVLQSDRQRQGGE 230
++ K+S G+ + +++ R VLQ+DR R+ G+
Sbjct: 441 EELKKSSGSLSDNVLHTLERMEVLQNDRARRWGD 474
>SB_48202| Best HMM Match : GARS_B (HMM E-Value=0.49)
Length = 293
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 1 ARGK-HPAPMQRPSREQYAAMCARAQATGQPLPAHVFTHVN 120
A GK HP + P + A +C + TG P A + TH N
Sbjct: 240 AMGKAHPYEKKLPKPDDLAVVCYTSGTTGNPKGA-MITHSN 279
>SB_34988| Best HMM Match : zf-CCHC (HMM E-Value=3e-12)
Length = 469
Score = 25.8 bits (54), Expect = 8.7
Identities = 14/30 (46%), Positives = 15/30 (50%)
Frame = +1
Query: 73 QATGQPLPAHVFTHVNGKPTNISGRGGRRH 162
QAT P H +G PT S RGG RH
Sbjct: 198 QATSFPF----IVHYDGCPTTPSDRGGHRH 223
>SB_15899| Best HMM Match : PAN (HMM E-Value=0.00033)
Length = 234
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +3
Query: 243 LWGVAARGAGALAYDVCRSACRTRE 317
LWG + G+L+Y+VC C+ ++
Sbjct: 74 LWGDQSVLEGSLSYEVCIERCKAKK 98
>SB_13681| Best HMM Match : Guanylate_cyc (HMM E-Value=2.8e-27)
Length = 517
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +3
Query: 126 TDKYKRSGGTAARDLVDGRARRAVLQSDRQRQGGEADAQLW 248
TD + G + + A+RA++ S+ QRQ + Q W
Sbjct: 285 TDTVSKETGVFSSLIDTLNAKRAIILSNEQRQANVTEGQNW 325
>SB_4344| Best HMM Match : zf-C2H2 (HMM E-Value=0)
Length = 1080
Score = 25.8 bits (54), Expect = 8.7
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 58 MCARAQATGQPLPAHVFTHVNGKP 129
+C RA A G L H+ TH KP
Sbjct: 850 LCERAFAKGYNLKTHMRTHTGEKP 873
>SB_50772| Best HMM Match : PEGSRP (HMM E-Value=8)
Length = 111
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 177 HPRDHVPPSPPTAYI 133
HP H PPSPP + +
Sbjct: 27 HPSKHTPPSPPRSAV 41
>SB_44194| Best HMM Match : PEGSRP (HMM E-Value=8)
Length = 207
Score = 25.8 bits (54), Expect = 8.7
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = -1
Query: 177 HPRDHVPPSPPTAYI 133
HP H PPSPP + +
Sbjct: 27 HPSKHTPPSPPRSAV 41
>SB_35350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 626
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 204 SEVQLVGRVHPRDHVP 157
SE++LV + HP+DH P
Sbjct: 152 SEIELVFKPHPKDHDP 167
>SB_31122| Best HMM Match : RVT_1 (HMM E-Value=0.0033)
Length = 324
Score = 25.8 bits (54), Expect = 8.7
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = -2
Query: 107 KTCAGSGWPVACARAHMAAYCSREGRCMGAGCLPR 3
K CA + W CAR AA GC P+
Sbjct: 51 KKCANNYWSNLCARIQSAADTGNVKGMFDVGCPPK 85
>SB_11442| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 170
Score = 25.8 bits (54), Expect = 8.7
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = +1
Query: 178 DAPDELYFRATDSAKAARRTLSCGELRR-GARAPW 279
D P L++R +A A T SC +RR G APW
Sbjct: 74 DLPGNLWYRFLGAAGNAMPT-SCVPVRRCGTHAPW 107
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,566,015
Number of Sequences: 59808
Number of extensions: 209094
Number of successful extensions: 826
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 473307974
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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