Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K10
(336 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal prot... 31 0.27
AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical... 30 0.47
AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical... 30 0.47
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 29 0.63
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 29 0.63
AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical ... 27 3.3
Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical pr... 27 4.4
Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical pr... 26 5.8
Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical pr... 26 5.8
Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical pr... 26 5.8
Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical pr... 26 5.8
U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein ... 26 5.8
U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein ... 26 5.8
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 26 5.8
Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical p... 26 7.7
Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical p... 26 7.7
Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical pr... 26 7.7
Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical pr... 26 7.7
AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical ... 26 7.7
AC024775-7|AAK68451.1| 251|Caenorhabditis elegans Hypothetical ... 26 7.7
>U42436-10|AAF99899.1| 272|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 2 protein.
Length = 272
Score = 30.7 bits (66), Expect = 0.27
Identities = 24/61 (39%), Positives = 27/61 (44%)
Frame = +2
Query: 146 GGDGGT*SRGWTRPTSCTSERPTAPRRRGGRSAVGSCGAGRGRLGVRCVQECLPHTGRGR 325
GG GG RG RP +RP RGGR G G GR G + E P T GR
Sbjct: 12 GGRGG--GRGGARPAG---DRPAGRGGRGGRGGRGGRGGRAGRGGEK-ETEWTPVTKLGR 65
Query: 326 V 328
+
Sbjct: 66 L 66
>AC025716-21|AAT39978.1| 586|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18b protein.
Length = 586
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 PTSCTSERPTAPRRRGGRSAVGSCGAG-RGRLGVR 286
P+S +S RP P+ R +A G+ G G RG G R
Sbjct: 499 PSSSSSRRPRQPKPRANNTAAGAGGGGKRGTSGGR 533
>AC025716-20|AAT39977.2| 946|Caenorhabditis elegans Hypothetical
protein Y39G10AR.18a protein.
Length = 946
Score = 29.9 bits (64), Expect = 0.47
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +2
Query: 185 PTSCTSERPTAPRRRGGRSAVGSCGAG-RGRLGVR 286
P+S +S RP P+ R +A G+ G G RG G R
Sbjct: 859 PSSSSSRRPRQPKPRANNTAAGAGGGGKRGTSGGR 893
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 29.5 bits (63), Expect = 0.63
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 147 GGTAARDLVDGRARRAVLQSDRQRQGGEADAQLWGVAARGAGA 275
GG ++ + DG+ R + S GG+ A G A GAGA
Sbjct: 289 GGRSSSEKSDGQLNREISGSSEAGAGGKGGAGADGAAGSGAGA 331
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 29.5 bits (63), Expect = 0.63
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 147 GGTAARDLVDGRARRAVLQSDRQRQGGEADAQLWGVAARGAGA 275
GG ++ + DG+ R + S GG+ A G A GAGA
Sbjct: 289 GGRSSSEKSDGQLNREISGSSEAGAGGKGGAGADGAAGSGAGA 331
>AF078786-2|AAC26941.1| 889|Caenorhabditis elegans Hypothetical
protein M01G5.1 protein.
Length = 889
Score = 27.1 bits (57), Expect = 3.3
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = +2
Query: 209 PTAPRRRGGRSAVGSCGAGRGR 274
P RRGGR G G GRGR
Sbjct: 840 PRVRGRRGGRGRSGGRGGGRGR 861
>Z75539-1|CAA99843.1| 672|Caenorhabditis elegans Hypothetical
protein F28C1.1 protein.
Length = 672
Score = 26.6 bits (56), Expect = 4.4
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +2
Query: 146 GGDGGT*SRGWTRPTSCTSERPTAPRRR 229
GG+GG R W+R S + R + PRRR
Sbjct: 390 GGNGGMNRRSWSRSRSRSRSR-SPPRRR 416
>Z37983-7|CAA86058.1| 1106|Caenorhabditis elegans Hypothetical
protein B0393.5 protein.
Length = 1106
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 113 CVKTCAGSGWPVACARA-HM--AAYCSRE-GRCMGAGCLP 6
C+++CA S W C+++ H C +E GRC C P
Sbjct: 190 CIESCAPSQWFNDCSKSCHCDGGDSCDQENGRCPNGKCSP 229
>Z27078-8|CAH04706.2| 1446|Caenorhabditis elegans Hypothetical
protein K04H4.2c protein.
Length = 1446
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 230 GGRSAVGSCGAGRGRLGVRCVQ-ECLP 307
GG +VG C +G G C+Q +C P
Sbjct: 891 GGGYSVGGCSSGYCATGYSCIQNQCCP 917
>Z27078-2|CAA81588.3| 788|Caenorhabditis elegans Hypothetical
protein K04H4.2b protein.
Length = 788
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 230 GGRSAVGSCGAGRGRLGVRCVQ-ECLP 307
GG +VG C +G G C+Q +C P
Sbjct: 233 GGGYSVGGCSSGYCATGYSCIQNQCCP 259
>Z27078-1|CAA81587.2| 628|Caenorhabditis elegans Hypothetical
protein K04H4.2a protein.
Length = 628
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Frame = +2
Query: 230 GGRSAVGSCGAGRGRLGVRCVQ-ECLP 307
GG +VG C +G G C+Q +C P
Sbjct: 233 GGGYSVGGCSSGYCATGYSCIQNQCCP 259
>U97016-4|AAN84886.1| 2692|Caenorhabditis elegans Lethal protein 363,
isoform b protein.
Length = 2692
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 43 EQYAAMCARAQATGQPLPAHVFTHVNGKPTNISGRGGRRHVISWMDAPDELYFR 204
EQY + RAQ + L + VF NG S + G R + + A ++L+ R
Sbjct: 1214 EQYRKLAQRAQMSRDVLTSSVFAGSNGNIQYSSTQAGMRGQANNVYANNDLHER 1267
>U97016-3|AAN84885.1| 2695|Caenorhabditis elegans Lethal protein 363,
isoform a protein.
Length = 2695
Score = 26.2 bits (55), Expect = 5.8
Identities = 17/54 (31%), Positives = 26/54 (48%)
Frame = +1
Query: 43 EQYAAMCARAQATGQPLPAHVFTHVNGKPTNISGRGGRRHVISWMDAPDELYFR 204
EQY + RAQ + L + VF NG S + G R + + A ++L+ R
Sbjct: 1214 EQYRKLAQRAQMSRDVLTSSVFAGSNGNIQYSSTQAGMRGQANNVYANNDLHER 1267
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 26.2 bits (55), Expect = 5.8
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 127 PTNISGRGGRRHVISWMDAPDELYFRATDSAKAA 228
P + G GRRH ++ ++ PD A KA+
Sbjct: 1185 PLSAVGGAGRRHTVAGLETPDSALKPAPTKRKAS 1218
>Z73899-13|CAM35841.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 208 TDSAKAARRTLSCGELRRGARAP 276
+ S +RR GELRRG+RAP
Sbjct: 384 SQSESESRRGSVFGELRRGSRAP 406
>Z73899-11|CAA98082.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 208 TDSAKAARRTLSCGELRRGARAP 276
+ S +RR GELRRG+RAP
Sbjct: 913 SQSESESRRGSVFGELRRGSRAP 935
>Z73897-6|CAM35838.1| 6629|Caenorhabditis elegans Hypothetical
protein ZK617.1c protein.
Length = 6629
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 208 TDSAKAARRTLSCGELRRGARAP 276
+ S +RR GELRRG+RAP
Sbjct: 384 SQSESESRRGSVFGELRRGSRAP 406
>Z73897-5|CAA98065.2| 7158|Caenorhabditis elegans Hypothetical
protein ZK617.1b protein.
Length = 7158
Score = 25.8 bits (54), Expect = 7.7
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +1
Query: 208 TDSAKAARRTLSCGELRRGARAP 276
+ S +RR GELRRG+RAP
Sbjct: 913 SQSESESRRGSVFGELRRGSRAP 935
>AF077533-1|AAZ91357.1| 1126|Caenorhabditis elegans Hypothetical
protein F54G2.1a protein.
Length = 1126
Score = 25.8 bits (54), Expect = 7.7
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = -1
Query: 165 HVPPSPPTAYICRFTV 118
H+PP+PP+ + FTV
Sbjct: 1037 HIPPNPPSTAMLHFTV 1052
>AC024775-7|AAK68451.1| 251|Caenorhabditis elegans Hypothetical
protein Y41D4A.1 protein.
Length = 251
Score = 25.8 bits (54), Expect = 7.7
Identities = 10/26 (38%), Positives = 11/26 (42%)
Frame = -2
Query: 104 TCAGSGWPVACARAHMAAYCSREGRC 27
T G+ W VAC C GRC
Sbjct: 152 TTTGNEWNVACGGQPALGSCDMSGRC 177
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,268,932
Number of Sequences: 27780
Number of extensions: 147977
Number of successful extensions: 584
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 418861482
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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