Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K10
         (336 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    26   0.14 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   0.75 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   0.99 
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    22   2.3  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   5.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   7.0  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    20   9.2  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    20   9.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    20   9.2  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    20   9.2  

>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 25.8 bits (54), Expect = 0.14
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 10  KHPAPMQRPSREQY-AAMCARAQATGQPLPAHVFTHVNGKPTNI 138
           +H A      +E+Y   +C R   +   L  H++T+   +P +I
Sbjct: 23  RHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHKSRPGDI 66


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 23.4 bits (48), Expect = 0.75
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 156 AARDLVDGRARRAVLQSDRQRQGGEADAQLWGVAARG 266
           A  +L DGR  +   +  RQR   E D++  GV  +G
Sbjct: 473 AMENLGDGRNNKEDSEEFRQRLRKELDSKTGGVNLKG 509


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 0.99
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 159  PPSPPTAYICRFTVYMCED 103
            PPS P   I ++TVY   D
Sbjct: 1202 PPSQPNGVITQYTVYTKAD 1220


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 136 ISGRGGR-RHVISWMDAPDELYFRATDSAKAAR 231
           +  R GR +  I+W +   E YF   DS  A+R
Sbjct: 250 LCNRLGRVKRFINWHEPIPEAYFPKLDSLVASR 282


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 5.3
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 183 RVHPRDHVPPSPPTAYIC 130
           +VH R H    P T  IC
Sbjct: 220 KVHTRTHTGEKPYTCDIC 237


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 7.0
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +1

Query: 136 ISGRGGRRHVISWMDAPDELYFR 204
           I  RG  R  I   D P+E Y R
Sbjct: 259 IISRGQVRVTIKQPDTPEEKYIR 281


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 233 GRSAVGSCGAGRGRL 277
           G  A+G C  G GRL
Sbjct: 2   GWVALGRCAGGGGRL 16


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 233 GRSAVGSCGAGRGRL 277
           G  A+G C  G GRL
Sbjct: 2   GWVALGRCAGGGGRL 16


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 233 GRSAVGSCGAGRGRL 277
           G  A+G C  G GRL
Sbjct: 2   GWVALGRCAGGGGRL 16


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.8 bits (39), Expect = 9.2
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +2

Query: 233 GRSAVGSCGAGRGRL 277
           G  A+G C  G GRL
Sbjct: 2   GWVALGRCAGGGGRL 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,862
Number of Sequences: 438
Number of extensions: 1698
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7591023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)