Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K10
         (336 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT d...    29   1.0  
At1g20220.1 68414.m02525 expressed protein                             29   1.0  
At2g17230.1 68415.m01990 phosphate-responsive 1 family protein s...    28   1.3  
At2g40070.1 68415.m04923 expressed protein                             28   1.8  
At3g56360.1 68416.m06268 expressed protein unknown protein 110K5...    27   2.4  
At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gen...    27   3.1  
At3g06870.1 68416.m00816 proline-rich family protein contains pr...    27   3.1  
At2g43945.1 68415.m05462 expressed protein                             27   3.1  
At5g05250.1 68418.m00562 expressed protein                             26   5.4  
At1g14970.1 68414.m01788 expressed protein contains Pfam PF03138...    26   5.4  
At5g03990.1 68418.m00379 expressed protein predicted protein, Ar...    26   7.2  
At5g07150.1 68418.m00815 leucine-rich repeat family protein cont...    25   9.5  

>At5g22010.1 68418.m02561 AAA-type ATPase family protein / BRCT
           domain-containing protein contains Pfam profiles:
           PF00533 BRCA1 C Terminus (BRCT) domain, PF00004 ATPase
           family associated with various cellular activities (AAA)
          Length = 956

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 14/25 (56%), Positives = 17/25 (68%)
 Frame = +2

Query: 212 TAPRRRGGRSAVGSCGAGRGRLGVR 286
           +A R RGGR+A G+   GRGR G R
Sbjct: 155 SAGRGRGGRAAPGASTGGRGRGGGR 179


>At1g20220.1 68414.m02525 expressed protein
          Length = 315

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +2

Query: 215 APRRRGGRSAVGSCGAGRGRLG 280
           +PR RGGR   G  G GRGR G
Sbjct: 147 SPRGRGGRRGRGGRGRGRGRGG 168


>At2g17230.1 68415.m01990 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 363

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +1

Query: 121 GKPTNISGRGGRRHVISWMDAPD 189
           GK  N++G+GGR+ ++ W+  P+
Sbjct: 330 GKTFNMNGKGGRKFLVQWIWNPN 352


>At2g40070.1 68415.m04923 expressed protein
          Length = 607

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 21/61 (34%), Positives = 24/61 (39%), Gaps = 10/61 (16%)
 Frame = +2

Query: 182 RPTSCTSERPTAPRRR----------GGRSAVGSCGAGRGRLGVRCVQECLPHTGRGRVR 331
           RP S T  RP AP  R          GGR    SC   RGR  +      +P   RG  +
Sbjct: 394 RPLSATRGRPGAPSSRSGSVEPGGPPGGRPRRQSCSPSRGRAPMYSSGSSVPAVNRGYSK 453

Query: 332 A 334
           A
Sbjct: 454 A 454


>At3g56360.1 68416.m06268 expressed protein unknown protein 110K5.12
           - Sorghum bicolor, TREMBL:AF124045_5
          Length = 233

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 2/47 (4%)
 Frame = +3

Query: 198 LQSDRQRQGGEA--DAQLWGVAARGAGALAYDVCRSACRTREGGGCG 332
           +  D    GG    D   WG+ A+G G+    VC     TR   G G
Sbjct: 155 IADDDDHDGGACGEDTSAWGIVAQGRGSDTGPVCYLLKTTRVRSGMG 201


>At3g28780.1 68416.m03592 glycine-rich protein similar to H41 gene
           for histone protein GB:X15142 GI:3204 [Physarum
           polycephalum]
          Length = 614

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/44 (40%), Positives = 21/44 (47%)
 Frame = +3

Query: 144 SGGTAARDLVDGRARRAVLQSDRQRQGGEADAQLWGVAARGAGA 275
           SGG AA +   G A  A         GGE+ +   G AA GAGA
Sbjct: 252 SGGAAAGETASGGAAAADTSGGSAETGGESAS---GGAASGAGA 292


>At3g06870.1 68416.m00816 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 214

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -1

Query: 252 LPTAERPPRRLGAVGRSEVQLVGRVHPRDHV---PPSPPT 142
           LP  E PP  +  VG SE  L+G       +   PP PPT
Sbjct: 74  LPNDEPPPPPIPFVGVSETTLLGLSSSSSTITSMPPPPPT 113


>At2g43945.1 68415.m05462 expressed protein
          Length = 289

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 3/50 (6%)
 Frame = +2

Query: 185 PTSCTSERPTAPRRRGGRSAVGSCG---AGRGRLGVRCVQECLPHTGRGR 325
           P+S  S+ P   RR    S   S     +GR R   RCV  CLP   R +
Sbjct: 31  PSSFRSKNPNFKRRLSSSSCCSSQSQLFSGRCRSYSRCVTMCLPEHMRNQ 80


>At5g05250.1 68418.m00562 expressed protein
          Length = 239

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = +3

Query: 222 GGEADAQLWGVAARGAGALAYDVCRSACRTREGGGCG 332
           GG+   + WG+  +G G     VC     TR G G G
Sbjct: 168 GGDG-TRAWGLVVQGRGVECGPVCYLLKTTRVGSGSG 203


>At1g14970.1 68414.m01788 expressed protein contains Pfam PF03138:
           Plant protein family. The function of this family of
           plant proteins is unknown;  previously annotated as
           'auxin-independent growth promoter -related'  based on
           similarity to axi 1 protein (GB:X80301) (GI:559920) from
           [Nicotiana tabacum], which, due to scienitific fraud was
           retracted. Retraction in: Schell J. EMBO J 1999 May
           17;18(10):2908. PMID:10400497.
          Length = 562

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 10/26 (38%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 201 EVQLVGRVHPRDHVPPSPPTA-YICR 127
           ++ +  R+   DH  PSPPT+ ++CR
Sbjct: 8   DLSIQNRLPGSDHTTPSPPTSPHLCR 33


>At5g03990.1 68418.m00379 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 302

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 15/36 (41%), Positives = 17/36 (47%)
 Frame = +2

Query: 224 RRGGRSAVGSCGAGRGRLGVRCVQECLPHTGRGRVR 331
           R  GR   G    G GR G   V++C    GRGR R
Sbjct: 250 RDQGRENRGWRKRGEGRHGGERVEDCRWRNGRGRSR 285


>At5g07150.1 68418.m00815 leucine-rich repeat family protein
           contains weak similarity to LRR receptor-like protein
           kinase [Nicotiana tabacum] gi|7672732|gb|AAF66615;
           contains Pfam PF00560 domain Leucine Rich Repeat
          Length = 553

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 234 PPRRLGAVGRSEVQLVGRVHPRDHVPPSPPTA 139
           PP+ +GA   +E Q++    P    P  PP A
Sbjct: 175 PPQNIGASPPTETQVIPNPSPVPPPPAQPPPA 206


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,977,878
Number of Sequences: 28952
Number of extensions: 140087
Number of successful extensions: 441
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 389454624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)