Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K09
         (410 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   2.0  
SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid alpha...    26   2.6  
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch...    25   4.6  
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    25   6.1  
SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase Exg2|Schizosacch...    24   8.0  

>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 26.2 bits (55), Expect = 2.0
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = -1

Query: 122  LACYDSLCSCVSYVFGL-IFKNLVPHFNHIKNFL 24
            L C  SL +C+ Y FGL   K ++     IK FL
Sbjct: 2044 LCCSGSLSNCLHYDFGLRAMKVVIKAAKRIKGFL 2077


>SPAC56F8.06c |alg10||dolichyl-phosphate-glucose-glycolipid
           alpha-glucosyltransferase Alg10|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 445

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -2

Query: 379 FQVIETLSVTSMFEFLLISSNLYLCKSASNLYFSYFTVIF 260
           F  I  L +TS+  FLLIS+ +     A  + F YF + F
Sbjct: 354 FLDISKLQMTSLTFFLLISTTILTLVPAPLVEFRYFLLPF 393


>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
            Rev3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1480

 Score = 25.0 bits (52), Expect = 4.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 105  RIITRKNRLELFLHKGAPNAILLIEND 185
            +I+  K +L    H   PN + LI+ND
Sbjct: 979  KIVNGKVKLGFMFHSSNPNIVNLIKND 1005


>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +3

Query: 66  ENESEHVRDARTQRIITRKNRLELFLHKGAPNAILLIENDYN 191
           +NE+  +R     R++ +   L + L+ G  NAI+  E+  N
Sbjct: 444 QNEALLLRKQENDRLVKQVEELTVALNSGKMNAIVEAESSKN 485


>SPAC12B10.11 |exg2||glucan 1,3-beta-glucosidase
           Exg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 570

 Score = 24.2 bits (50), Expect = 8.0
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -1

Query: 125 VLACYDSLCSCVSYVFGLIFKNLVPH 48
           +L  + SLC  +S +  LIF  ++PH
Sbjct: 39  LLTFFVSLCVFLSIILPLIFLVIIPH 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,483,222
Number of Sequences: 5004
Number of extensions: 27591
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)