Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K09
         (410 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32)                 28   3.4  
SB_22963| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.4  
SB_17191| Best HMM Match : 7tm_1 (HMM E-Value=1.7)                     28   3.4  
SB_5976| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2)              27   4.5  
SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)                27   6.0  
SB_55124| Best HMM Match : FxsA (HMM E-Value=0.78)                     27   7.9  
SB_45801| Best HMM Match : DUF577 (HMM E-Value=3.8)                    27   7.9  
SB_19999| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.9  

>SB_43628| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 280

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 364 TLSVTSMFEFLLISSNLYLCKSASNLYFSYFTVIFTGIKLISFW 233
           T+ V+S     L S N Y      +LY  YFT+  T I ++S W
Sbjct: 106 TMGVSSTQTLALTSVNRYFKVVKPSLYRKYFTMRATIICILSSW 149


>SB_32120| Best HMM Match : 7tm_1 (HMM E-Value=4.9e-32)
          Length = 459

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 364 TLSVTSMFEFLLISSNLYLCKSASNLYFSYFTVIFTGIKLISFW 233
           TL+  S+    L S N Y      +LY  YFT+  T I ++S W
Sbjct: 285 TLAAASIQTLALTSVNRYFKVVKPSLYRKYFTMRATIICILSSW 328


>SB_22963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 364 TLSVTSMFEFLLISSNLYLCKSASNLYFSYFTVIFTGIKLISFW 233
           TL+  S+    L S N Y      +LY  YFT+  T I ++S W
Sbjct: 166 TLAAASIQTLALTSVNRYFKVVKPSLYRKYFTMRATIICILSSW 209


>SB_17191| Best HMM Match : 7tm_1 (HMM E-Value=1.7)
          Length = 111

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 364 TLSVTSMFEFLLISSNLYLCKSASNLYFSYFTVIFTGIKLISFW 233
           T+ V+S     L S N Y      +LY  YFT+  T I ++S W
Sbjct: 34  TMGVSSTQTLALTSVNRYFKVVKPSLYRKYFTMRATIICILSSW 77


>SB_5976| Best HMM Match : Nucleoplasmin (HMM E-Value=1.2)
          Length = 356

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = -2

Query: 376 QVIETLSVTSMFEFLLISSNLYLCKSASNLYFSYFTVIFTG 254
           QVIE    ++ +E  ++S+  +LCK  S L+ +  T+   G
Sbjct: 310 QVIEPEISSTNYELYMVSNASFLCKCKSLLFLATLTLSLLG 350


>SB_20620| Best HMM Match : zf-HIT (HMM E-Value=8.5e-10)
          Length = 567

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 246 NLMPVKITVKYEKYKFDADLQRYKLDEISKNSNI-EVTE 359
           NL PVK+  +  K K D  L + ++ EISK   + E TE
Sbjct: 445 NLNPVKLLERINKAKHDFKLLQTEMMEISKGQKVAERTE 483


>SB_55124| Best HMM Match : FxsA (HMM E-Value=0.78)
          Length = 311

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = -2

Query: 349 SMFEFLLISSNLYLCKSASNLYF 281
           +M E+LL SS  YL  S+ N+Y+
Sbjct: 271 AMLEYLLPSSKEYLLPSSKNIYY 293


>SB_45801| Best HMM Match : DUF577 (HMM E-Value=3.8)
          Length = 443

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 258 VKITVKYEKYKFDADLQRYKLDEI 329
           VKI V+  K+K+DA LQ+    EI
Sbjct: 106 VKILVRLAKFKYDAQLQKNDPSEI 129


>SB_19999| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 453

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 258 VKITVKYEKYKFDADLQRYKLDEI 329
           VKI V+  K+K+DA LQ+    EI
Sbjct: 106 VKILVRLAKFKYDAQLQKNDPSEI 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,169,572
Number of Sequences: 59808
Number of extensions: 171196
Number of successful extensions: 339
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 320
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 752487277
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)