Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K09
         (410 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical pr...    30   0.57 
U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical pr...    30   0.57 
U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical pr...    30   0.57 
AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobuli...    30   0.57 
Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical p...    27   5.3  
AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical...    27   5.3  
AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine re...    27   7.0  

>U58729-3|AAM54204.1|  955|Caenorhabditis elegans Hypothetical
           protein F02G3.1c protein.
          Length = 955

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 249 LMPVKITVKYEKYKFDADLQRYKLDEISKNSNIEVTESVS 368
           L+  K+T++  KYK D D    K DE S N+N E TE+ +
Sbjct: 735 LLKFKVTIQEMKYKTDDDEVEEKSDEKS-NNNSEETETTT 773


>U58729-2|AAM54203.1|  913|Caenorhabditis elegans Hypothetical
           protein F02G3.1b protein.
          Length = 913

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 249 LMPVKITVKYEKYKFDADLQRYKLDEISKNSNIEVTESVS 368
           L+  K+T++  KYK D D    K DE S N+N E TE+ +
Sbjct: 708 LLKFKVTIQEMKYKTDDDEVEEKSDEKS-NNNSEETETTT 746


>U58729-1|AAM54202.1|  928|Caenorhabditis elegans Hypothetical
           protein F02G3.1a protein.
          Length = 928

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 249 LMPVKITVKYEKYKFDADLQRYKLDEISKNSNIEVTESVS 368
           L+  K+T++  KYK D D    K DE S N+N E TE+ +
Sbjct: 708 LLKFKVTIQEMKYKTDDDEVEEKSDEKS-NNNSEETETTT 746


>AF456360-1|AAL60231.1|  928|Caenorhabditis elegans immunoglobulin
           domain-containingprotein F02G3.1 protein.
          Length = 928

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 249 LMPVKITVKYEKYKFDADLQRYKLDEISKNSNIEVTESVS 368
           L+  K+T++  KYK D D    K DE S N+N E TE+ +
Sbjct: 708 LLKFKVTIQEMKYKTDDDEVEEKSDEKS-NNNSEETETTT 746


>Z81104-10|CAB03214.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 376 QVIETLSVTSMFEFLLISSNLYLCKSASNLYFSYFTVI 263
           Q+++ LS  ++   ++ S  LYLC   +N + SY+T I
Sbjct: 206 QLLQRLSKVAICHTIVFS--LYLCWQVTNSFLSYYTSI 241


>AL033510-11|CAA22071.1|  293|Caenorhabditis elegans Hypothetical
           protein Y40H7A.8 protein.
          Length = 293

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -2

Query: 376 QVIETLSVTSMFEFLLISSNLYLCKSASNLYFSYFTVI 263
           Q+++ LS  ++   ++ S  LYLC   +N + SY+T I
Sbjct: 206 QLLQRLSKVAICHTIVFS--LYLCWQVTNSFLSYYTSI 241


>AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 3 protein.
          Length = 341

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -2

Query: 385 EVFQVIETLSVTSMFEFLLISSNLYLCKSASNLYFSYF 272
           E +Q+ E L  ++MF  + + + +Y+   A   Y  YF
Sbjct: 225 ERYQISENLRTSTMFRIMSVVTWVYVAYKAIGSYMMYF 262


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,101,521
Number of Sequences: 27780
Number of extensions: 150923
Number of successful extensions: 335
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 662437636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)