Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K09
         (410 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g23980.1 68418.m02818 ferric-chelate reductase, putative simi...    27   6.5  
At5g60430.1 68418.m07580 expressed protein                             26   8.6  

>At5g23980.1 68418.m02818 ferric-chelate reductase, putative similar
           to ferric-chelate reductase (FRO1) [Pisum sativum]
           GI:15341529; contains Pfam profile PF01794: Ferric
           reductase like transmembrane component
          Length = 699

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -2

Query: 292 NLYFSYFTVIFTGIKLISFWITI*SNFFNNYWWQL*SFSINKIAFGAPL*RNNSNLFLRV 113
           +L  +   V+F G  L+  WI I +N F + W    S  +N   FG       +NL L  
Sbjct: 6   SLVKTLMVVLFLGWILV--WIMISTNLFKSKWTPKLSKYLNTTYFGP----QGTNLVLLT 59

Query: 112 MIRCVLASLTC 80
           +    +A L+C
Sbjct: 60  VPMMFIAVLSC 70


>At5g60430.1 68418.m07580 expressed protein
          Length = 156

 Score = 26.2 bits (55), Expect = 8.6
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = -1

Query: 176 YQQNCIWGSFMKEQF*PVLACYDSLCSCVSYVFGLIFKN 60
           YQQN + GSF   Q  P + C     + + + F   F+N
Sbjct: 106 YQQNFVDGSFSLSQVLPSILCIKISTNFLFFHFFFCFRN 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,292,585
Number of Sequences: 28952
Number of extensions: 126964
Number of successful extensions: 281
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 615542944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)