Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K08
(538 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181; Eukary... 292 3e-78
UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeb... 144 9e-34
UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n... 138 7e-32
UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5... 110 2e-23
UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella... 98 1e-19
UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep... 96 5e-19
UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1; Encephal... 93 4e-18
UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2; Sulfolo... 93 4e-18
UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus M... 91 1e-17
UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5; Thermop... 90 3e-17
UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12; Archae... 90 3e-17
UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2; Methano... 89 6e-17
UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 80 4e-14
UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcu... 77 2e-13
UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5; Archaea... 77 2e-13
UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3; Methano... 75 1e-12
UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8; Euryarc... 74 2e-12
UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultu... 73 3e-12
UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa... 72 1e-11
UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3; Thermop... 72 1e-11
UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3; Halobac... 67 2e-10
UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1... 66 4e-10
UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3; Euth... 61 1e-08
UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1; ... 56 7e-07
UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1; Arabid... 54 2e-06
UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3; Betapr... 48 1e-04
UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1... 47 2e-04
UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6; Bacteria... 47 2e-04
UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein pr... 47 3e-04
UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=... 46 4e-04
UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n... 46 6e-04
UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n... 46 7e-04
UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n... 46 7e-04
UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2; ... 45 0.001
UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37; Bacteri... 45 0.001
UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19; Bacteri... 45 0.001
UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17; Bacteri... 43 0.004
UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein pr... 43 0.005
UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13; Clost... 42 0.007
UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2; ... 42 0.007
UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1; Lentisph... 42 0.012
UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1; Calycul... 42 0.012
UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165, w... 42 0.012
UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4; Chloroflexac... 41 0.016
UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lambl... 41 0.016
UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein pr... 41 0.016
UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellul... 41 0.021
UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1; Algoriph... 40 0.027
UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1; ... 40 0.036
UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10; Conife... 40 0.036
UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole ge... 40 0.036
UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas ... 40 0.036
UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellu... 40 0.036
UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2; Cystob... 40 0.036
UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;... 40 0.048
UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein pr... 40 0.048
UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1; ... 39 0.084
UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1; ... 39 0.084
UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4; n... 39 0.084
UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1; ... 38 0.11
UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8; Ricketts... 38 0.15
UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20; Actinob... 38 0.15
UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=... 38 0.15
UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n... 38 0.15
UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyosteliu... 38 0.19
UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11; Mollicu... 38 0.19
UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;... 37 0.26
UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14; Bacteri... 37 0.26
UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia... 37 0.26
UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1; Bdello... 37 0.26
UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86; Bacteri... 36 0.45
UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35; Bacteri... 36 0.45
UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.45
UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25; Bacteri... 36 0.59
UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249 p... 36 0.78
UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n... 36 0.78
UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1... 35 1.0
UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular or... 35 1.4
UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1; Pl... 35 1.4
UniRef50_Q6MYA2 Cluster: Zinc finger protein, putative; n=2; Asp... 34 1.8
UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5; Alphapro... 34 1.8
UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;... 34 2.4
UniRef50_UPI0000498936 Cluster: U3 small nucleolar ribonucleopro... 33 3.1
UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep: CG... 33 4.2
UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative; ... 33 4.2
UniRef50_Q2UJB9 Cluster: Predicted protein; n=1; Aspergillus ory... 33 4.2
UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like p... 32 7.3
UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2; ... 32 7.3
UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1; Tric... 32 7.3
UniRef50_A0BWL3 Cluster: Chromosome undetermined scaffold_132, w... 32 7.3
UniRef50_UPI000023DE23 Cluster: hypothetical protein FG05327.1; ... 32 9.6
UniRef50_Q4RR73 Cluster: Chromosome 14 SCAF15003, whole genome s... 32 9.6
UniRef50_A6YEB5 Cluster: Ribosomal protein S4; n=1; Chlorokybus ... 32 9.6
UniRef50_Q7SB57 Cluster: Putative uncharacterized protein NCU062... 32 9.6
>UniRef50_P46781 Cluster: 40S ribosomal protein S9; n=181;
Eukaryota|Rep: 40S ribosomal protein S9 - Homo sapiens
(Human)
Length = 194
Score = 292 bits (717), Expect = 3e-78
Identities = 142/170 (83%), Positives = 154/170 (90%), Gaps = 1/170 (0%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXX 357
LDQ+LK+IGEYGLRNKREVWRVK+TLA+IRKAARELLTLDEKDP+RLFEGNA
Sbjct: 25 LDQELKLIGEYGLRNKREVWRVKFTLAKIRKAARELLTLDEKDPRRLFEGNALLRRLVRI 84
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
LDE +MKLDY+LGLKIEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQVVNI
Sbjct: 85 GVLDEGKMKLDYILGLKIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQVVNI 144
Query: 176 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGG-GATNDEEED 30
PSFIVRLDS KHIDFSL+SP+GGGRPGRVKRKN +KGQGG GA +DEEED
Sbjct: 145 PSFIVRLDSQKHIDFSLRSPYGGGRPGRVKRKNAKKGQGGAGAGDDEEED 194
>UniRef50_O15612 Cluster: 40S ribosomal protein S9; n=2; Entamoeba
histolytica|Rep: 40S ribosomal protein S9 - Entamoeba
histolytica
Length = 185
Score = 144 bits (350), Expect = 9e-34
Identities = 76/158 (48%), Positives = 103/158 (65%), Gaps = 1/158 (0%)
Frame = -3
Query: 533 DQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXX 354
D +LK++G++GL+NK+E+ RV Y L +R A+ +L D KDPKRL EG A
Sbjct: 25 DAELKLVGQFGLKNKKEIQRVHYMLGHMRTIAKVMLMKDAKDPKRLLEGAALLRRLHNLG 84
Query: 353 XLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIP 174
L Q KL++VL LK E+ LERRLQT V++ G AKSIHHAR+LIR + I+V KQVV++P
Sbjct: 85 ILPRDQNKLEFVLALKEENLLERRLQTLVYRKGFAKSIHHARVLIRGKMIKVGKQVVDVP 144
Query: 173 SFIVRLDSGKHIDFSLKSPFGGGR-PGRVKRKNLRKGQ 63
SF+VR++S I + +P GR KRKN G+
Sbjct: 145 SFLVRVESEPLIQLADNTPLTNPEINGRRKRKNNHAGK 182
>UniRef50_UPI0000501C59 Cluster: UPI0000501C59 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000501C59 UniRef100 entry -
Rattus norvegicus
Length = 199
Score = 138 bits (334), Expect = 7e-32
Identities = 84/160 (52%), Positives = 102/160 (63%), Gaps = 8/160 (5%)
Frame = -3
Query: 485 EVWRVKYTLARIRKAARELLTL-DEKDPKRLFEGNAXXXXXXXXXXLDEKQMK------L 327
EVWRVK+TL +IRKA ELL L +EKDP+ LFE N L E +MK
Sbjct: 41 EVWRVKFTLTKIRKAFWELLLLLNEKDPRYLFEDNLLLRQLVHTGLLGEGKMKPRRSWFT 100
Query: 326 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSG 147
+ GL+I F E++LQTQVF+ L KSI HA +L+ HIR+ KQVV+I F V LDS
Sbjct: 101 SWAFGLRIY-FSEKQLQTQVFELVLDKSIRHACVLLCHCHIRIGKQVVDIAFFFVGLDSR 159
Query: 146 KHIDFSLKSPFGGGRPGRVKRKNLRKGQGG-GATNDEEED 30
KH DF GGG PG VKRKN++KG+GG GA +DEEED
Sbjct: 160 KHTDFFRHCLNGGGYPGSVKRKNVKKGRGGAGAGDDEEED 199
>UniRef50_Q10KL6 Cluster: 40S ribosomal protein S9, putative; n=5;
Oryza sativa|Rep: 40S ribosomal protein S9, putative -
Oryza sativa subsp. japonica (Rice)
Length = 157
Score = 110 bits (264), Expect = 2e-23
Identities = 60/110 (54%), Positives = 72/110 (65%)
Frame = -3
Query: 533 DQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXX 354
D +LK+ GEYGLR+K E+WRV+ ELLTLDEK+P+R+FEG A
Sbjct: 27 DAELKLYGEYGLRSKCELWRVQ-----------ELLTLDEKNPRRIFEGEALLRHMNRYG 75
Query: 353 XLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 204
L E Q KLDYVL L +E+FL+ RLQT VFK G KSIHH +LIRQ HI
Sbjct: 76 LLGEGQNKLDYVLALTVENFLQCRLQTIVFKNGTVKSIHHDHVLIRQHHI 125
>UniRef50_Q3LWD1 Cluster: Ribosomal protein S9; n=1; Bigelowiella
natans|Rep: Ribosomal protein S9 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 180
Score = 97.9 bits (233), Expect = 1e-19
Identities = 51/139 (36%), Positives = 82/139 (58%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXX 357
L ++++I +GL+NKRE+WR ++ L+++RK A +L+ K K +
Sbjct: 26 LCNEIRMINLFGLKNKRELWRTQFFLSKLRKVAEKLIYKKAKLEKIPSQSYGILWFCYKY 85
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
++ L+ ++ + + L RRLQT V + L+K+IH ARILI +HI+V+ Q+VN
Sbjct: 86 NFMNNMTFCLESIIKIDLRSILSRRLQTVVKQLKLSKTIHEARILIMHKHIQVKNQIVNK 145
Query: 176 PSFIVRLDSGKHIDFSLKS 120
PSF+VR D+ I FSL S
Sbjct: 146 PSFLVRKDNEIFISFSLNS 164
>UniRef50_Q6CM19 Cluster: Similarity; n=2; Saccharomycetaceae|Rep:
Similarity - Kluyveromyces lactis (Yeast) (Candida
sphaerica)
Length = 246
Score = 95.9 bits (228), Expect = 5e-19
Identities = 53/144 (36%), Positives = 89/144 (61%)
Frame = +3
Query: 93 ATGPAAAERRLQREVNVLAGVQADDERRNVHHLLADTNMPLSDQDAGMMD*LRKTSLEHL 272
+T + E R EVNVL Q+D ER +V LL ++N+ L DQD+ +++ L +T L L
Sbjct: 21 STWSSTTEWRGSSEVNVLLRFQSDHERWDVDDLLTNSNVSLGDQDSSVVNRLGQTQLVDL 80
Query: 273 SLKTALQEVLNLQTEHIIQFHLFLIKHSDPNQTT**SIAFKQSLRILLVECQQFTGSLTD 452
L+++ QE+ NLQ++ IIQ L + ++ +Q++ SI F+QSL +L V QQ +G +D
Sbjct: 81 GLQSSFQEIFNLQSQDIIQLLLVFRQDTNSHQSSDQSITFEQSLWVLFVSGQQISGGSSD 140
Query: 453 ASERVLDAPHFTLVAETILSDDLQ 524
+ ++ +F+LV +T+ + LQ
Sbjct: 141 LRQLERNSVNFSLVLQTVFTSQLQ 164
>UniRef50_Q8SRW6 Cluster: 40S RIBOSOMAL PROTEIN S9; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S9 -
Encephalitozoon cuniculi
Length = 184
Score = 93.1 bits (221), Expect = 4e-18
Identities = 54/149 (36%), Positives = 87/149 (58%), Gaps = 7/149 (4%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDP-----KRLFEGNAXXX 372
L ++ +++G YGL+NK E+W ++ A+ ++ AR LLT + + L
Sbjct: 22 LIREAQLVGVYGLKNKHELWVMEKIFAKDKERARILLTSTNPEDIPINGRSLLRRLMKYG 81
Query: 371 XXXXXXXLDEKQMK--LDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRV 198
D++++ L+ VL L I +LERRLQ +VF AGLAKS+HHAR+LI R I +
Sbjct: 82 ILGGIDLCDKQEVVNGLNKVLDLTINHYLERRLQFRVFAAGLAKSVHHARLLIGGRCISI 141
Query: 197 RKQVVNIPSFIVRLDSGKHIDFSLKSPFG 111
+ Q+V++P F+VR D I+++ S +G
Sbjct: 142 KDQIVDVPGFMVRADKEPLIEYNPYSRYG 170
>UniRef50_Q96YV8 Cluster: 30S ribosomal protein S4P; n=2;
Sulfolobaceae|Rep: 30S ribosomal protein S4P -
Sulfolobus tokodaii
Length = 177
Score = 93.1 bits (221), Expect = 4e-18
Identities = 56/156 (35%), Positives = 84/156 (53%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXX 357
L+++ +IG+YGLRNKRE+W + + + R AR LL L + R
Sbjct: 23 LEKEQVLIGKYGLRNKRELWLAQTIIRKFRHQARSLLALPPAE--RSTREKQLIQKLYRM 80
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
+++ LD +LGL E++LERRLQT V+K GLA++I+ AR LI HI + + V
Sbjct: 81 GIIEKDNATLDDILGLNEENYLERRLQTIVYKKGLARTIYQARQLIVHGHIAIGGRRVTS 140
Query: 176 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRK 69
P +IV IDF SPF P + +N+++
Sbjct: 141 PGYIVMRGEEDLIDFYPTSPFKQHPPTQQGEENVQQ 176
>UniRef50_A7IAH7 Cluster: Ribosomal protein S4; n=1; Candidatus
Methanoregula boonei 6A8|Rep: Ribosomal protein S4 -
Methanoregula boonei (strain 6A8)
Length = 185
Score = 91.1 bits (216), Expect = 1e-17
Identities = 54/143 (37%), Positives = 80/143 (55%), Gaps = 2/143 (1%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL-DEKDPKRLFEGN-AXXXXXX 363
++++ +++ EYGLRNKREVW+ + L + RKAARELL L + +FE +
Sbjct: 23 IEEETRLVIEYGLRNKREVWKAQSHLRKYRKAARELLALMSSATNQTVFEAKKSELISHM 82
Query: 362 XXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 183
L +D VL LK+ LERRLQT V++ GLA+S AR L+ HI + + V
Sbjct: 83 QRAGLLGPDADIDNVLALKVPAQLERRLQTLVYRKGLARSPKQARQLVTHGHIAIGGRRV 142
Query: 182 NIPSFIVRLDSGKHIDFSLKSPF 114
+P ++V I ++ KSPF
Sbjct: 143 TVPGYLVTRGEETTISYAGKSPF 165
>UniRef50_Q8ZTV1 Cluster: 30S ribosomal protein S4P; n=5;
Thermoproteaceae|Rep: 30S ribosomal protein S4P -
Pyrobaculum aerophilum
Length = 159
Score = 89.8 bits (213), Expect = 3e-17
Identities = 50/125 (40%), Positives = 74/125 (59%), Gaps = 2/125 (1%)
Frame = -3
Query: 530 QDLKIIGEYGLRNKREVWRVKYTLARIRKAARELL--TLDEKDPKRLFEGNAXXXXXXXX 357
++L+++GEYGLRNK+E+W + L I + AR LL T +E+ P +
Sbjct: 27 EELQLMGEYGLRNKKELWLARARLKWITRRARSLLSMTAEERAPLEM----PFKEKLYKM 82
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
+++ ++LD +L L + LERRLQT V++ GLAKSIHHAR LI H+ V + V
Sbjct: 83 GFIEDPNVQLDRILSLDVRAILERRLQTIVYRMGLAKSIHHARQLIVHGHVAVAGRRVTS 142
Query: 176 PSFIV 162
P F+V
Sbjct: 143 PGFLV 147
>UniRef50_P54020 Cluster: 30S ribosomal protein S4P; n=12;
Archaea|Rep: 30S ribosomal protein S4P - Methanococcus
jannaschii
Length = 187
Score = 89.8 bits (213), Expect = 3e-17
Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 1/151 (0%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXX 357
++++ ++ +YGLR KREVW+ + L + R+ AR L++ ++ + E
Sbjct: 24 IEREKELCRKYGLRRKREVWKAETILRKYRRQARRLIS--DRTEQGAKEAVQLFNVLKKY 81
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
L + LD VL L +ED LERRLQT VF+ GLA++ AR LI HI V +VV
Sbjct: 82 GILKIENPTLDDVLSLTVEDILERRLQTLVFRKGLARTPRQARQLIVHGHIAVNGRVVTA 141
Query: 176 PSFIVRLDSGKHIDFSLKSPFG-GGRPGRVK 87
PS++V ++ I ++ SPF P R K
Sbjct: 142 PSYMVTVEEEDKISYAKNSPFNDDNHPERAK 172
>UniRef50_Q2FT97 Cluster: 30S ribosomal protein S4P; n=2;
Methanomicrobiales|Rep: 30S ribosomal protein S4P -
Methanospirillum hungatei (strain JF-1 / DSM 864)
Length = 181
Score = 89.0 bits (211), Expect = 6e-17
Identities = 50/142 (35%), Positives = 76/142 (53%), Gaps = 2/142 (1%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDE--KDPKRLFEGNAXXXXXX 363
++++ +++ EYGLRNKREVW K L + RKAARE++ L + R+
Sbjct: 23 IEEETRLVIEYGLRNKREVWIAKGALRKYRKAAREIIALQSTGSEQARVERKKDELIGSL 82
Query: 362 XXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVV 183
+ + +D VL LK+E L+RRLQTQV++ G A+S AR I HI + + V
Sbjct: 83 QRSGMLSENADIDDVLALKVEQQLDRRLQTQVYRRGFARSPKQARQFITHGHIAIGGRRV 142
Query: 182 NIPSFIVRLDSGKHIDFSLKSP 117
IP + V + I ++ SP
Sbjct: 143 TIPGYTVSAKEQEEISYAGSSP 164
>UniRef50_Q74NF7 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Nanoarchaeum
equitans
Length = 180
Score = 79.8 bits (188), Expect = 4e-14
Identities = 47/135 (34%), Positives = 74/135 (54%)
Frame = -3
Query: 521 KIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXXLDE 342
+++ EYGL+NKRE+W + T+AR +A L + + + E +
Sbjct: 25 RLMKEYGLKNKRELW-IAETIARKWRAYARYLNAKQAAGQDISEEKERFLTKLKKLGVLS 83
Query: 341 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
+ +LD VL L ++D LERRLQT + + GLAK++ AR I HI V +VV+ PS++V
Sbjct: 84 ENAELDDVLDLTVKDVLERRLQTMLVRKGLAKTMKQARQFIVHGHIMVNGEVVDAPSYLV 143
Query: 161 RLDSGKHIDFSLKSP 117
+ + I+F SP
Sbjct: 144 KKEEEDKIEFVPFSP 158
>UniRef50_A6UW05 Cluster: Ribosomal protein S4; n=1; Methanococcus
aeolicus Nankai-3|Rep: Ribosomal protein S4 -
Methanococcus aeolicus Nankai-3
Length = 177
Score = 77.4 bits (182), Expect = 2e-13
Identities = 47/140 (33%), Positives = 73/140 (52%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXX 357
+ Q+ ++ +YGL NK+E+W+++ L R+ AR+L++ ++ E
Sbjct: 23 IKQERELSNKYGLSNKKEIWKMETRLRTFRRQARKLISDTSAQGEK--EAVQLFGILNRY 80
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
L ++ LD VL L +E LERRLQT VF+ GLA + AR I HI V + +N
Sbjct: 81 GILLKEDATLDDVLSLNLESILERRLQTLVFRKGLANTPKQARQFIVHGHIAVNGKKINA 140
Query: 176 PSFIVRLDSGKHIDFSLKSP 117
PS++V L I + SP
Sbjct: 141 PSYLVPLVEEDAISYMPNSP 160
>UniRef50_Q97B95 Cluster: 30S ribosomal protein S4P; n=5;
Archaea|Rep: 30S ribosomal protein S4P - Thermoplasma
volcanium
Length = 200
Score = 77.4 bits (182), Expect = 2e-13
Identities = 53/141 (37%), Positives = 71/141 (50%), Gaps = 1/141 (0%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLT-LDEKDPKRLFEGNAXXXXXXX 360
+D++ KI+ +YGL+NKRE+WR + L+ IR AR L L D +
Sbjct: 23 IDEENKILVKYGLKNKREIWRSEAMLSSIRSQARYLRARLRASDANAQKQLERMIKRLSR 82
Query: 359 XXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 180
L +K LD VL L +E+ L+RRLQT VFK LA S AR LI HI V + V
Sbjct: 83 YKILSDKAT-LDDVLSLTVENILDRRLQTIVFKKNLALSEKQARQLITHGHITVNGRRVT 141
Query: 179 IPSFIVRLDSGKHIDFSLKSP 117
+P +V I + SP
Sbjct: 142 VPGMLVEAQYEDTIAYYENSP 162
>UniRef50_Q2NFZ4 Cluster: 30S ribosomal protein S4P; n=3;
Methanobacteriaceae|Rep: 30S ribosomal protein S4P -
Methanosphaera stadtmanae (strain DSM 3091)
Length = 182
Score = 74.9 bits (176), Expect = 1e-12
Identities = 40/135 (29%), Positives = 70/135 (51%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXX 357
+ ++ ++ +YGL+NK+E+W+ + + R R+ AR +L +D + +
Sbjct: 23 IKEENRLANKYGLKNKKEIWKAESRVKRYRRDARIILGMDIDERA---DKEKELLDHLVR 79
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
KL+ VL L +ED L RRLQ+ VFK GL+ + AR+ + HI + + +N
Sbjct: 80 AGFISPNAKLEEVLDLNVEDILRRRLQSLVFKRGLSHTAKEARLFVVHGHITLNGKKINA 139
Query: 176 PSFIVRLDSGKHIDF 132
P +V ++IDF
Sbjct: 140 PGHLVEKADEENIDF 154
>UniRef50_Q8PV18 Cluster: 30S ribosomal protein S4P; n=8;
Euryarchaeota|Rep: 30S ribosomal protein S4P -
Methanosarcina mazei (Methanosarcina frisia)
Length = 219
Score = 74.1 bits (174), Expect = 2e-12
Identities = 46/143 (32%), Positives = 71/143 (49%), Gaps = 6/143 (4%)
Frame = -3
Query: 527 DLKIIGEYGLRNKREVWRVKYTLARIRKAARELLT-LDEKDPKRLFEGN-----AXXXXX 366
+++++ YGLRNK+EVW+ L R AR+LL + + EG+
Sbjct: 26 EVQLVKAYGLRNKKEVWKAASMLRMYRSEARKLLAQVASGGQEGELEGHYATQSEEILSK 85
Query: 365 XXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQV 186
+ + +D +L LK E+ LERRLQTQV + GLA+++ AR I HI + +
Sbjct: 86 LIRYGIIKADANVDDILSLKTENILERRLQTQVLRLGLARTVIQARQFITHGHIAINGRK 145
Query: 185 VNIPSFIVRLDSGKHIDFSLKSP 117
IP +V + HI + SP
Sbjct: 146 ATIPGMLVSKEDEMHIGYYGSSP 168
>UniRef50_Q0W1V5 Cluster: 30S ribosomal protein S4P; n=1; uncultured
methanogenic archaeon RC-I|Rep: 30S ribosomal protein
S4P - Uncultured methanogenic archaeon RC-I
Length = 205
Score = 73.3 bits (172), Expect = 3e-12
Identities = 41/144 (28%), Positives = 72/144 (50%), Gaps = 4/144 (2%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTL----DEKDPKRLFEGNAXXXX 369
+D++ ++ +YGLRNK+ VW+ L + R AR LL + + +
Sbjct: 23 IDEETSLVKKYGLRNKKSVWKHASDLRKYRSNARALLGVMSAGNLPEDSHYIRDAQNIVK 82
Query: 368 XXXXXXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ 189
+ ++ KL+ VL LK++D +ERRLQT +++ G A SI AR I HI + +
Sbjct: 83 KLQTLGILKEDAKLEDVLALKVDDIMERRLQTIIYRKGFANSIKQARQFIVHGHISLNGR 142
Query: 188 VVNIPSFIVRLDSGKHIDFSLKSP 117
+ +P ++V + + + SP
Sbjct: 143 KITVPGYLVLKSEEDMLSYYVGSP 166
>UniRef50_Q0D4G1 Cluster: Os07g0628300 protein; n=2; Oryza sativa
(japonica cultivar-group)|Rep: Os07g0628300 protein -
Oryza sativa subsp. japonica (Rice)
Length = 94
Score = 71.7 bits (168), Expect = 1e-11
Identities = 36/57 (63%), Positives = 42/57 (73%)
Frame = -3
Query: 200 VRKQVVNIPSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 30
V +Q+VNIPSFIVRL+S KHI FSL SP GG RVKRKN +K GGG +EEE+
Sbjct: 27 VGRQLVNIPSFIVRLESEKHIAFSLTSPLGGSPAVRVKRKN-QKASGGGGDGEEEEE 82
>UniRef50_A0RY02 Cluster: 30S ribosomal protein S4P; n=3;
Thermoprotei|Rep: 30S ribosomal protein S4P -
Cenarchaeum symbiosum
Length = 205
Score = 71.7 bits (168), Expect = 1e-11
Identities = 47/139 (33%), Positives = 70/139 (50%)
Frame = -3
Query: 530 QDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXX 351
++L+ +G +GLR KRE+W+ L+R+R AR LL L ++ +R
Sbjct: 25 EELRTLGTFGLRTKRELWKAHTELSRVRNQARSLLALGQEVRERK---EPVLLRSLARIG 81
Query: 350 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 171
L K LD VL L++ D L RRLQT V K + + AR + HI + +VV IPS
Sbjct: 82 LVGKDASLDDVLNLQVNDLLGRRLQTIVMKKLGFSTPYQARQAVVHGHITISDRVVTIPS 141
Query: 170 FIVRLDSGKHIDFSLKSPF 114
+ V ++ I + S F
Sbjct: 142 YTVYVEEEGDIKLTGGSAF 160
>UniRef50_Q9HQJ6 Cluster: 30S ribosomal protein S4P; n=3;
Halobacteriaceae|Rep: 30S ribosomal protein S4P -
Halobacterium salinarium (Halobacterium halobium)
Length = 170
Score = 67.3 bits (157), Expect = 2e-10
Identities = 43/133 (32%), Positives = 65/133 (48%)
Frame = -3
Query: 530 QDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXX 351
++ ++ YGL+NK E+WR + L R+ AR LL G
Sbjct: 25 EESDLLSRYGLKNKEELWRAQSELRDYRREARRLL-----GQTGTVSGEEFVARLQRIGI 79
Query: 350 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 171
L E++ +LD VL L++ D LERRLQT V++ GLA ++ AR + H+ V V PS
Sbjct: 80 LSEEE-RLDDVLSLEVTDVLERRLQTVVYREGLANTMGQARQFVSHGHVTVDGSRVTEPS 138
Query: 170 FIVRLDSGKHIDF 132
+ V + + F
Sbjct: 139 YTVPVSEENTLAF 151
>UniRef50_A0SNY6 Cluster: Ribosomal protein small subunit S9; n=1;
uncultured euryarchaeote ARMAN-2|Rep: Ribosomal protein
small subunit S9 - uncultured euryarchaeote ARMAN-2
Length = 187
Score = 66.5 bits (155), Expect = 4e-10
Identities = 44/122 (36%), Positives = 63/122 (51%)
Frame = -3
Query: 527 DLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXXL 348
D +I EYGL N E+W+V+ ++R+R R LL+ + + +
Sbjct: 26 DNALIAEYGLANMHELWKVQSEISRLRGNVRVLLSGSSSH-----DTSDKIIARMVKFGI 80
Query: 347 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
E L+ VL + FLERRLQT VFK GLA++I AR LI I V + V+IP +
Sbjct: 81 LENGATLEKVLDITPNAFLERRLQTVVFKKGLARTIKQARQLITHGFIAVNMKRVSIPGY 140
Query: 167 IV 162
+V
Sbjct: 141 MV 142
>UniRef50_A6MWA4 Cluster: Ribosomal subunit protein S9; n=3;
Eutheria|Rep: Ribosomal subunit protein S9 - Trichechus
manatus latirostris
Length = 30
Score = 61.3 bits (142), Expect = 1e-08
Identities = 27/30 (90%), Positives = 30/30 (100%)
Frame = -3
Query: 482 VWRVKYTLARIRKAARELLTLDEKDPKRLF 393
VWRVK+TLA+IRKAARELLTLDEKDP+RLF
Sbjct: 1 VWRVKFTLAKIRKAARELLTLDEKDPRRLF 30
>UniRef50_A5BPM7 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 103
Score = 55.6 bits (128), Expect = 7e-07
Identities = 28/45 (62%), Positives = 33/45 (73%), Gaps = 3/45 (6%)
Frame = -3
Query: 176 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 51
PSF+VR+DS K D SL SP GGGRPGRVK+K+L+ K GGA
Sbjct: 24 PSFLVRMDSRKRGDSSLTSPLGGGRPGRVKKKSLKVAAKEAAGGA 68
>UniRef50_Q9SZ81 Cluster: Putative ribosomal protein; n=1;
Arabidopsis thaliana|Rep: Putative ribosomal protein -
Arabidopsis thaliana (Mouse-ear cress)
Length = 106
Score = 54.4 bits (125), Expect = 2e-06
Identities = 25/36 (69%), Positives = 31/36 (86%)
Frame = -3
Query: 347 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSI 240
D ++ KLDYVL L +E+FLERRLQT VFK+G+AKSI
Sbjct: 17 DSEKNKLDYVLALTVENFLERRLQTIVFKSGMAKSI 52
>UniRef50_Q82T00 Cluster: 30S ribosomal protein S4 B; n=3;
Betaproteobacteria|Rep: 30S ribosomal protein S4 B -
Nitrosomonas europaea
Length = 205
Score = 48.4 bits (110), Expect = 1e-04
Identities = 27/65 (41%), Positives = 38/65 (58%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 135
G + LERRL VF+AG A ++ AR L+ RH+R+ + VNIPS +RL+ G I
Sbjct: 85 GETLLQLLERRLDNVVFRAGFAPTVIAARQLVSHRHVRLNGKPVNIPS--IRLNVGDEIT 142
Query: 134 FSLKS 120
+S
Sbjct: 143 IKPES 147
>UniRef50_O21263 Cluster: Mitochondrial ribosomal protein S4; n=1;
Reclinomonas americana|Rep: Mitochondrial ribosomal
protein S4 - Reclinomonas americana
Length = 249
Score = 47.2 bits (107), Expect = 2e-04
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = -3
Query: 317 LGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 159
+G + LERRL +++AG SI+ AR+L+ +H+ V ++ NI S++V+
Sbjct: 123 IGDNLIKMLERRLDIIIYRAGFVNSIYQARLLVNHKHVLVNNKIQNISSYLVQ 175
>UniRef50_Q8RE43 Cluster: 30S ribosomal protein S4; n=6;
Bacteria|Rep: 30S ribosomal protein S4 - Fusobacterium
nucleatum subsp. nucleatum
Length = 195
Score = 47.2 bits (107), Expect = 2e-04
Identities = 26/64 (40%), Positives = 39/64 (60%)
Frame = -3
Query: 347 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
+E KL V GL + ++LERRL+ V++ G AK+ AR ++ HI V + VNI SF
Sbjct: 69 EEAARKLG-VTGLTLIEYLERRLENVVYRLGFAKTRRQARQIVSHGHIAVNGRRVNIASF 127
Query: 167 IVRL 156
V++
Sbjct: 128 RVKV 131
>UniRef50_Q9NV31 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=13; Euteleostomi|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Homo sapiens (Human)
Length = 184
Score = 46.8 bits (106), Expect = 3e-04
Identities = 32/122 (26%), Positives = 55/122 (45%)
Frame = -3
Query: 527 DLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXXL 348
+L+++ Y L+ + + R +R+ AR L L E+D R+ +A L
Sbjct: 30 ELRVLRRYRLQRREDYTRYNQLSRAVRELARRLRDLPERDQFRV-RASAALLDKLYALGL 88
Query: 347 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
+ L+ + F RRL T + K +A+ + A + Q H+RV VV P+F
Sbjct: 89 VPTRGSLELCDFVTASSFCRRRLPTVLLKLRMAQHLQAAVAFVEQGHVRVGPDVVTDPAF 148
Query: 167 IV 162
+V
Sbjct: 149 LV 150
>UniRef50_Q4AEQ5 Cluster: Ribosomal protein S4:RNA-binding S4; n=1;
Chlorobium phaeobacteroides BS1|Rep: Ribosomal protein
S4:RNA-binding S4 - Chlorobium phaeobacteroides BS1
Length = 134
Score = 46.4 bits (105), Expect = 4e-04
Identities = 21/51 (41%), Positives = 31/51 (60%)
Frame = -3
Query: 320 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
+ G + F+E RL V++ G+A + AR L+ RHI V Q+VN+PSF
Sbjct: 82 ITGENLLKFIEARLDNTVYRLGIAPTRSGARQLVSHRHITVNGQIVNVPSF 132
>UniRef50_Q011L4 Cluster: Chromosome 09 contig 1, DNA sequence; n=1;
Ostreococcus tauri|Rep: Chromosome 09 contig 1, DNA
sequence - Ostreococcus tauri
Length = 293
Score = 46.0 bits (104), Expect = 6e-04
Identities = 26/52 (50%), Positives = 29/52 (55%)
Frame = +1
Query: 115 NGDFREKSMCLPESRRTMNEGMFTTCLRTRICLCLIKMRA*WIDFARPALNT 270
+G+ KSMC S RT G FT CL TRI IK RA D ARP+L T
Sbjct: 58 SGELSAKSMCFWLSVRTKKLGTFTICLPTRIWRWRIKTRAWCTDLARPSLKT 109
Score = 37.5 bits (83), Expect = 0.19
Identities = 17/49 (34%), Positives = 31/49 (63%)
Frame = +3
Query: 381 SIAFKQSLRILLVECQQFTGSLTDASERVLDAPHFTLVAETILSDDLQV 527
S+ + +LR+LL++ +Q + + + L AP +LVA+ L+DDLQ+
Sbjct: 136 SLTLEDALRVLLIKRKQHASGVAELVKGELHAPQLSLVAKAELTDDLQL 184
>UniRef50_Q8SRU8 Cluster: U3 SMALL NUCLEOLAR RIBONUCLEOPROTEIN; n=1;
Encephalitozoon cuniculi|Rep: U3 SMALL NUCLEOLAR
RIBONUCLEOPROTEIN - Encephalitozoon cuniculi
Length = 180
Score = 45.6 bits (103), Expect = 7e-04
Identities = 32/118 (27%), Positives = 50/118 (42%)
Frame = -3
Query: 515 IGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXXLDEKQ 336
I +YGLR++ E + + ++RK A L L E DP R + K
Sbjct: 32 IAKYGLRDREEYTKYSRIVGKVRKLAEALARLKESDPVRTTITKKLVGRLYSVGVI--KN 89
Query: 335 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
KL + + F ERRL + + + S A + H+R+ +VV PS I+
Sbjct: 90 RKLVDCTKVTVSSFCERRLPMVMKRIRMVPSFKDATRFVEHGHVRLGSKVVYDPSTII 147
>UniRef50_P48270 Cluster: Chloroplast 30S ribosomal protein S4; n=2;
Chlorophyceae|Rep: Chloroplast 30S ribosomal protein S4
- Chlamydomonas reinhardtii
Length = 257
Score = 45.6 bits (103), Expect = 7e-04
Identities = 25/61 (40%), Positives = 34/61 (55%)
Frame = -3
Query: 341 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
K K+ G + FLE RL VF+ +A +I AR LI HIRV + VNIPS++
Sbjct: 92 KAKKIKESTGQVLLQFLEMRLDNIVFRLNMAPTIPAARQLISHGHIRVNNKKVNIPSYMC 151
Query: 161 R 159
+
Sbjct: 152 K 152
>UniRef50_A5KQD5 Cluster: Putative uncharacterized protein; n=2;
Ruminococcus|Rep: Putative uncharacterized protein -
Ruminococcus torques ATCC 27756
Length = 181
Score = 44.8 bits (101), Expect = 0.001
Identities = 20/61 (32%), Positives = 37/61 (60%)
Frame = -3
Query: 341 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
K +++ + G + LE RL +F+ GLA++ AR ++ +H+ V + VNIPS++V
Sbjct: 53 KAKQMEGMTGENLMRILESRLDNVIFRMGLARTRKEARQIVDHKHVLVNGKQVNIPSYLV 112
Query: 161 R 159
+
Sbjct: 113 K 113
>UniRef50_Q6AP44 Cluster: 30S ribosomal protein S4; n=37;
Bacteria|Rep: 30S ribosomal protein S4 - Desulfotalea
psychrophila
Length = 210
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/72 (37%), Positives = 38/72 (52%)
Frame = -3
Query: 320 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 141
V G + LERRL VF+AG A S AR ++R +HI + + V+IPS+ ++ G
Sbjct: 88 VAGENLLILLERRLDNAVFRAGFASSRTQARQIVRHKHILINGKRVDIPSY--QVSEGDV 145
Query: 140 IDFSLKSPFGGG 105
I KS G
Sbjct: 146 ISLREKSRANAG 157
>UniRef50_P59129 Cluster: 30S ribosomal protein S4; n=19;
Bacteria|Rep: 30S ribosomal protein S4 - Chlorobium
tepidum
Length = 203
Score = 44.8 bits (101), Expect = 0.001
Identities = 27/67 (40%), Positives = 36/67 (53%)
Frame = -3
Query: 320 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 141
V G + LERRL V++ G + S AR L+ H+ V + VNIPSF+V G
Sbjct: 82 VTGDNLVKMLERRLDNVVYRCGFSPSRAGARQLVTHGHMLVNGKKVNIPSFLV--SPGDQ 139
Query: 140 IDFSLKS 120
I+F KS
Sbjct: 140 IEFRQKS 146
>UniRef50_O66484 Cluster: 30S ribosomal protein S4; n=17;
Bacteria|Rep: 30S ribosomal protein S4 - Aquifex
aeolicus
Length = 211
Score = 43.2 bits (97), Expect = 0.004
Identities = 24/65 (36%), Positives = 36/65 (55%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 135
G + +LERRL V++ G A + AR L+ H+ V + VNIPS++V + G I+
Sbjct: 89 GEMLLQYLERRLDNVVYRLGFASTRRQARQLVAHGHVLVNGKKVNIPSYLV--EPGDVIE 146
Query: 134 FSLKS 120
KS
Sbjct: 147 IKEKS 151
>UniRef50_Q17AL1 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative; n=3;
Coelomata|Rep: U3 small nucleolar ribonucleoprotein
protein IMP3 (U3 snoRNP protein IMP3), putative - Aedes
aegypti (Yellowfever mosquito)
Length = 181
Score = 42.7 bits (96), Expect = 0.005
Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 1/123 (0%)
Frame = -3
Query: 527 DLKIIGEYGLRNKREVWRVKYTLAR-IRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXX 351
++KI+ Y ++ KRE + L+R IR+ ++ +D K P R E +
Sbjct: 29 EMKIMRRYNVQ-KREDYTTYNKLSRNIRELTNKIAEVDAKHPFRT-EMSGLLLEKLYVLG 86
Query: 350 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 171
L + L+ + F RRL + + +++++ HA +I H+RV VV P+
Sbjct: 87 LIPTKWDLENASKISASSFCRRRLPVVLLRNKMSENLKHATQMIEHGHVRVGTDVVKDPA 146
Query: 170 FIV 162
F+V
Sbjct: 147 FLV 149
>UniRef50_Q0TMU2 Cluster: 30S ribosomal protein S4 B; n=13;
Clostridiaceae|Rep: 30S ribosomal protein S4 B -
Clostridium perfringens (strain ATCC 13124 / NCTC 8237 /
Type A)
Length = 197
Score = 42.3 bits (95), Expect = 0.007
Identities = 24/58 (41%), Positives = 31/58 (53%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 120
LE RL V++ G A SI AR ++ H V + VNIPSF RL+ G + KS
Sbjct: 86 LESRLDNMVYRMGFASSIRQARQMVNHGHFLVNGKKVNIPSF--RLNIGDEVVLREKS 141
>UniRef50_P58134 Cluster: Plastid 30S ribosomal protein S4; n=2;
Eukaryota|Rep: Plastid 30S ribosomal protein S4 -
Astasia longa (Euglenophycean alga)
Length = 206
Score = 42.3 bits (95), Expect = 0.007
Identities = 26/59 (44%), Positives = 34/59 (57%)
Frame = -3
Query: 344 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
+K +KL G + LE RL V++ GLA +I +R LI HI V +VVNIPSF
Sbjct: 74 KKAIKLKGSSGENLLVALEMRLDNIVYRLGLAPTIISSRQLINHGHIYVDGKVVNIPSF 132
>UniRef50_A6DLN6 Cluster: 30S ribosomal protein S4; n=1;
Lentisphaera araneosa HTCC2155|Rep: 30S ribosomal
protein S4 - Lentisphaera araneosa HTCC2155
Length = 205
Score = 41.5 bits (93), Expect = 0.012
Identities = 23/62 (37%), Positives = 33/62 (53%)
Frame = -3
Query: 344 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 165
++ KL V G + LE RL V++ G A + AR L+ HIR+ + NIPS+
Sbjct: 77 DRAAKLSGVTGNNLMVLLEARLDNVVYRLGFAPTRSAARQLVGHGHIRINGRRCNIPSYS 136
Query: 164 VR 159
VR
Sbjct: 137 VR 138
>UniRef50_Q5YGE8 Cluster: Small ribosomal protein 4; n=1;
Calycularia crispula|Rep: Small ribosomal protein 4 -
Calycularia crispula
Length = 197
Score = 41.5 bits (93), Expect = 0.012
Identities = 19/49 (38%), Positives = 28/49 (57%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
G + LE RL +F+ G+A +I AR L+ RHI + V+IPS+
Sbjct: 76 GQVLLQLLEMRLDNTIFRLGMASTIPGARQLVSHRHILINNDAVDIPSY 124
>UniRef50_A7QT43 Cluster: Chromosome undetermined scaffold_165,
whole genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome undetermined scaffold_165, whole genome
shotgun sequence - Vitis vinifera (Grape)
Length = 203
Score = 41.5 bits (93), Expect = 0.012
Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
Frame = -3
Query: 215 QRHIRVRKQVVNIPSFI-----VRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGA 51
+R R R+ + IP + VR++ K IDFS GGGRPGRVKRK L+ A
Sbjct: 130 ERRYRGRRAFLVIPRVMGAPLSVRVEPQKLIDFSNTCLLGGGRPGRVKRKGLKVAAKKVA 189
Query: 50 TNDEE 36
D++
Sbjct: 190 GEDDD 194
>UniRef50_A5USG3 Cluster: Ribosomal protein S4; n=4;
Chloroflexaceae|Rep: Ribosomal protein S4 - Roseiflexus
sp. RS-1
Length = 206
Score = 41.1 bits (92), Expect = 0.016
Identities = 23/63 (36%), Positives = 32/63 (50%)
Frame = -3
Query: 344 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 165
EK + G + LERRL V++ G A + AR L+ HI V + NIPS+
Sbjct: 75 EKAQRFPGETGAYLFILLERRLDNVVYRLGFATTRAQARQLVSHGHITVNGRKTNIPSYT 134
Query: 164 VRL 156
VR+
Sbjct: 135 VRV 137
>UniRef50_Q7R0S4 Cluster: GLP_186_71509_70955; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_186_71509_70955 - Giardia lamblia
ATCC 50803
Length = 184
Score = 41.1 bits (92), Expect = 0.016
Identities = 30/122 (24%), Positives = 51/122 (41%)
Frame = -3
Query: 527 DLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXXL 348
D + +YG+ ++RE+ + T+ +IR L L + + R+ +
Sbjct: 28 DSATMNKYGVYDRRELITYRQTMRKIRHMVELLTQLPQDNNVRIELTRRLSRILYDMGVV 87
Query: 347 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
D Q LD + L L RRL + K + + I ++Q H+RV VV P+
Sbjct: 88 DNAQASLDDISKLNSSALLLRRLPCIMMKLKMVQKIQDGVRFVKQGHVRVGPNVVVNPAL 147
Query: 167 IV 162
V
Sbjct: 148 HV 149
>UniRef50_P32899 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3; n=34; Eukaryota|Rep: U3 small nucleolar
ribonucleoprotein protein IMP3 - Saccharomyces
cerevisiae (Baker's yeast)
Length = 183
Score = 41.1 bits (92), Expect = 0.016
Identities = 28/123 (22%), Positives = 52/123 (42%)
Frame = -3
Query: 530 QDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXX 351
+D +++ Y ++N+ + + IR+ A +L L DP R
Sbjct: 28 RDTQVMRTYHIQNREDYHKYNRICGDIRRLANKLSLLPPTDPFRRKHEQLLLDKLYAMGV 87
Query: 350 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 171
L K D + + RRL + + +A++I A I Q H+RV ++N P+
Sbjct: 88 LTTKSKISDLENKVTVSAICRRRLPVIMHRLKMAETIQDAVKFIEQGHVRVGPNLINDPA 147
Query: 170 FIV 162
++V
Sbjct: 148 YLV 150
>UniRef50_Q74K05 Cluster: 30S ribosomal protein S4; n=107; cellular
organisms|Rep: 30S ribosomal protein S4 - Lactobacillus
johnsonii
Length = 203
Score = 40.7 bits (91), Expect = 0.021
Identities = 25/65 (38%), Positives = 36/65 (55%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 135
G+ LERRL V++ GLA + AR L+ HI V + V+IPS+ V++ G+ I
Sbjct: 84 GVNFMALLERRLDNIVYRLGLASTREQARQLVNHGHILVDGKRVDIPSYEVKV--GQEIS 141
Query: 134 FSLKS 120
KS
Sbjct: 142 LRDKS 146
>UniRef50_A3HXD0 Cluster: 30S ribosomal protein S4; n=1;
Algoriphagus sp. PR1|Rep: 30S ribosomal protein S4 -
Algoriphagus sp. PR1
Length = 201
Score = 40.3 bits (90), Expect = 0.027
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = -3
Query: 320 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 159
+ G + LE RL V++ G++ + AR L+ +HI V ++VNIPS+ ++
Sbjct: 81 ITGENLLQLLEARLDNTVYRMGISPTRRGARQLVSHKHILVNGELVNIPSYSLK 134
>UniRef50_A4EA85 Cluster: Putative uncharacterized protein; n=1;
Collinsella aerofaciens ATCC 25986|Rep: Putative
uncharacterized protein - Collinsella aerofaciens ATCC
25986
Length = 198
Score = 39.9 bits (89), Expect = 0.036
Identities = 22/61 (36%), Positives = 33/61 (54%)
Frame = -3
Query: 341 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
K K++ V G + LE RL VF+ G A++ AR +R H V + V+IPS+ V
Sbjct: 70 KARKMNGVTGENLMIILESRLDNVVFRLGFARTRKEARQSVRHGHFTVNGKRVDIPSYRV 129
Query: 161 R 159
+
Sbjct: 130 K 130
>UniRef50_Q7YLR6 Cluster: Small ribosomal protein 4; n=10;
Coniferales|Rep: Small ribosomal protein 4 - Podocarpus
latifolius
Length = 222
Score = 39.9 bits (89), Expect = 0.036
Identities = 20/49 (40%), Positives = 30/49 (61%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
G + LE RL +F+ G+A +I AR L+ RHI V ++V+IPS+
Sbjct: 66 GQVLLQLLEMRLDNILFRLGMALTIPGARQLVNHRHILVNGRMVDIPSY 114
>UniRef50_A7QX06 Cluster: Chromosome chr14 scaffold_211, whole
genome shotgun sequence; n=2; Vitis vinifera|Rep:
Chromosome chr14 scaffold_211, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 276
Score = 39.9 bits (89), Expect = 0.036
Identities = 19/56 (33%), Positives = 31/56 (55%)
Frame = -3
Query: 332 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 165
K + +G + LE L +F+ G+A +I AR L+ RHI V ++V+IP +
Sbjct: 195 KAKWAIGRVLLQLLEMHLDNILFRLGMASTILGARQLVNHRHILVNGRIVDIPRLV 250
>UniRef50_Q9G884 Cluster: Ribosomal protein S4; n=1; Malawimonas
jakobiformis|Rep: Ribosomal protein S4 - Malawimonas
jakobiformis
Length = 225
Score = 39.9 bits (89), Expect = 0.036
Identities = 19/48 (39%), Positives = 28/48 (58%)
Frame = -3
Query: 299 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRL 156
+ LERRL T +F+ A S +AR LI HI + +VN+ S +V +
Sbjct: 107 NLLERRLDTILFRINWASSFFNARQLINHGHILINGNIVNVSSHLVNI 154
>UniRef50_Q2JUD6 Cluster: 30S ribosomal protein S4; n=2041; cellular
organisms|Rep: 30S ribosomal protein S4 - Synechococcus
sp. (strain JA-3-3Ab) (Cyanobacteria
bacteriumYellowstone A-Prime)
Length = 203
Score = 39.9 bits (89), Expect = 0.036
Identities = 21/49 (42%), Positives = 28/49 (57%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
GL + LE RL VF+ G+A +I AR L+ HI V + V IPS+
Sbjct: 83 GLALLQMLEMRLDCIVFRLGMAPTIPAARQLVSHGHIEVNGRKVTIPSY 131
>UniRef50_Q1CXF1 Cluster: 30S ribosomal protein S4 B; n=2;
Cystobacterineae|Rep: 30S ribosomal protein S4 B -
Myxococcus xanthus (strain DK 1622)
Length = 210
Score = 39.9 bits (89), Expect = 0.036
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHID 135
G + LE RL + V +AGLA SI AR +R ++ V + +IPSF R+ G +
Sbjct: 89 GTVLLQLLESRLDSLVLRAGLATSIRQARQFVRHGYLHVDGKRADIPSF--RVKPGSEVR 146
Query: 134 F 132
F
Sbjct: 147 F 147
>UniRef50_Q5DQ32 Cluster: Ribosomal protein small subunit 4; n=6;
Filicales|Rep: Ribosomal protein small subunit 4 -
Asplenium trichomanes subsp. inexpectans
Length = 169
Score = 39.5 bits (88), Expect = 0.048
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
LE RL +F G+A +I AR L+ RHI V +V+IPS+
Sbjct: 54 LEMRLDNVLFHLGMASTIPAARQLVNHRHILVNNCIVDIPSY 95
>UniRef50_A7AVJ4 Cluster: U3 small nucleolar ribonucleoprotein
protein IMP3-like protein; n=1; Babesia bovis|Rep: U3
small nucleolar ribonucleoprotein protein IMP3-like
protein - Babesia bovis
Length = 195
Score = 39.5 bits (88), Expect = 0.048
Identities = 40/145 (27%), Positives = 58/145 (40%), Gaps = 11/145 (7%)
Frame = -3
Query: 530 QDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRL-FEGNAXXXXXXXXX 354
++ KI+ Y +++ E + + RI K EL L E D R+ N
Sbjct: 27 RETKILRRYYIQDPEEYHKYNKLVGRITKLVSELRKLPEDDSFRIKMTDNLMEKLYVFKM 86
Query: 353 XL---DEKQMKLDYVLG-------LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 204
QM L V G L F RRL T + + + + A I Q HI
Sbjct: 87 MYIALSRYQMGLISVRGNLELCERLSASVFCRRRLATVLVQRKFCEHLKQAVTYIEQGHI 146
Query: 203 RVRKQVVNIPSFIVRLDSGKHIDFS 129
RV VVNIP++ V + HI ++
Sbjct: 147 RVGLDVVNIPAYHVTRELEDHITWA 171
>UniRef50_A5BYX8 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 187
Score = 38.7 bits (86), Expect = 0.084
Identities = 18/37 (48%), Positives = 25/37 (67%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELL 426
LD +LK IG Y LR KRE+W V+ +LA ++K L+
Sbjct: 135 LDAELKFIGGYELRCKRELWSVQMSLAALQKYFSSLM 171
>UniRef50_Q54XG2 Cluster: Putative uncharacterized protein; n=1;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 177
Score = 38.7 bits (86), Expect = 0.084
Identities = 26/123 (21%), Positives = 54/123 (43%)
Frame = -3
Query: 530 QDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXX 351
+D++ IG +GL+ K E +A+ + +E+ L ++DP + +
Sbjct: 29 KDVENIGRFGLKGKEEYAEYTKLVAQYKHVLKEISDLSDQDPVKQKLLSDLSEKLYNMGV 88
Query: 350 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 171
+D KQ ++ + F RR + K A+ + A L+ H+R+ + + P+
Sbjct: 89 IDLKQP--SELVKVNASSFCRRRAVVMLVKKKFAEHLTQAFGLLSHGHVRIGPETIQDPA 146
Query: 170 FIV 162
I+
Sbjct: 147 LII 149
>UniRef50_P56799 Cluster: Chloroplast 30S ribosomal protein S4;
n=1123; Embryophyta|Rep: Chloroplast 30S ribosomal
protein S4 - Arabidopsis thaliana (Mouse-ear cress)
Length = 201
Score = 38.7 bits (86), Expect = 0.084
Identities = 19/49 (38%), Positives = 29/49 (59%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
G + LE RL +F+ G+A +I AR L+ HI V ++V+IPS+
Sbjct: 80 GQVLLQLLEMRLDNILFRLGMALTIPQARQLVNHGHILVNGRIVDIPSY 128
>UniRef50_A5AVE2 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 247
Score = 38.3 bits (85), Expect = 0.11
Identities = 21/39 (53%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -3
Query: 158 LDSGKHIDFSLKSPFGGGRPGRVKRKNLR---KGQGGGA 51
+DS KH DFSL SP G R +VKRK L+ K GGA
Sbjct: 1 MDSRKHGDFSLTSPLGSSRLEKVKRKGLKVAAKKAAGGA 39
>UniRef50_Q2GDI3 Cluster: 30S ribosomal protein S4; n=8;
Rickettsiales|Rep: 30S ribosomal protein S4 -
Neorickettsia sennetsu (strain Miyayama)
Length = 205
Score = 37.9 bits (84), Expect = 0.15
Identities = 16/45 (35%), Positives = 30/45 (66%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 159
LE R+ + ++++G+ +I AR LI +H+ V ++VNI SF ++
Sbjct: 91 LESRVSSVLYRSGMVPTIFAARQLISHKHVTVNGEIVNICSFTLK 135
>UniRef50_A0JX91 Cluster: 30S ribosomal protein S4; n=20;
Actinobacteria (class)|Rep: 30S ribosomal protein S4 -
Arthrobacter sp. (strain FB24)
Length = 208
Score = 37.9 bits (84), Expect = 0.15
Identities = 23/61 (37%), Positives = 33/61 (54%)
Frame = -3
Query: 344 EKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFI 165
E+ + + G + + LE RL V +AG A++I AR L+ RHI V V+ PSF
Sbjct: 76 EEARRTKGLTGENLIELLEMRLDALVLRAGFARTIAQARQLVVHRHILVDGIRVDRPSFR 135
Query: 164 V 162
V
Sbjct: 136 V 136
>UniRef50_Q9XQQ7 Cluster: Apicoplast 30S ribosomal protein S4; n=1;
Toxoplasma gondii|Rep: Apicoplast 30S ribosomal protein
S4 - Toxoplasma gondii
Length = 198
Score = 37.9 bits (84), Expect = 0.15
Identities = 26/66 (39%), Positives = 36/66 (54%), Gaps = 5/66 (7%)
Frame = -3
Query: 344 EKQMK--LDYVLGLKIEDFL---ERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVN 180
E Q+K Y+ LKI + + E RL +F+ G AKSI+ AR LI I + +V
Sbjct: 61 ENQIKKYFKYIKLLKIFNLIQIIELRLDATIFRLGFAKSINQARQLITHGFIFINSILVK 120
Query: 179 IPSFIV 162
PSFI+
Sbjct: 121 KPSFIL 126
>UniRef50_Q06J34 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Bigelowiella natans|Rep: Chloroplast 30S ribosomal
protein S4 - Bigelowiella natans (Pedinomonas
minutissima) (Chlorarachnion sp.(strain CCMP 621))
Length = 194
Score = 37.9 bits (84), Expect = 0.15
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
G K+ LE RL T +++ G ++ AR LI HI V + V+IP F
Sbjct: 75 GDKLLQLLEMRLDTLLYRTGFVPTVASARQLISHGHINVNGKKVDIPGF 123
>UniRef50_Q9XPI8 Cluster: Ribosomal protein S4; n=2; Dictyostelium
discoideum|Rep: Ribosomal protein S4 - Dictyostelium
discoideum (Slime mold)
Length = 300
Score = 37.5 bits (83), Expect = 0.19
Identities = 22/92 (23%), Positives = 49/92 (53%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 114
LE+R+ + ++G +S++ AR +I +H+ V ++ ++P +++ + G I F
Sbjct: 144 LEKRVDMVLLRSGFVRSLYEARQIINHKHLLVNGKIASLPGYMINV--GDIISF------ 195
Query: 113 GGGRPGRVKRKNLRKGQGGGATNDEEED*TNK 18
+ G +KRK L++ + G + + TN+
Sbjct: 196 ---KEGSMKRKLLKRLKKGLISKKSRKRWTNR 224
>UniRef50_Q7NAV0 Cluster: 30S ribosomal protein S4; n=11;
Mollicutes|Rep: 30S ribosomal protein S4 - Mycoplasma
gallisepticum
Length = 207
Score = 37.5 bits (83), Expect = 0.19
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = -3
Query: 332 KLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLD 153
K+ +L + + LE RL VF+ G A + AR L+ H+ V + +IPS ++ L
Sbjct: 82 KMSGILTMNLFRTLESRLDNLVFRMGFAPTRRGARQLVSHGHVLVNGKTFDIPSALISLG 141
Query: 152 S 150
S
Sbjct: 142 S 142
>UniRef50_O01513 Cluster: Putative 40S ribosomal protein S4-like;
n=4; Bilateria|Rep: Putative 40S ribosomal protein
S4-like - Caenorhabditis elegans
Length = 183
Score = 37.1 bits (82), Expect = 0.26
Identities = 34/127 (26%), Positives = 55/127 (43%), Gaps = 3/127 (2%)
Frame = -3
Query: 491 KREVWRVKYTLA-RIRKAARELLTLDEKDPKR--LFEGNAXXXXXXXXXXLDEKQMKLDY 321
KRE + + TLA + R+ A + L E DP R E + ++
Sbjct: 40 KREHYALYNTLAAKSREVADLIKNLSESDPFRSKCTEDMLTKFYAAGLVPTSDTLERIGK 99
Query: 320 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKH 141
V G F RRL + G+ +S+ A L+ Q H+R+ ++V P+F+V S
Sbjct: 100 VTGAS---FARRRLPVVMRNIGMCESVKTASDLVEQGHVRIGTKLVTDPAFMVTRSSEDM 156
Query: 140 IDFSLKS 120
I ++ S
Sbjct: 157 ITWTKAS 163
>UniRef50_Q9X1I3 Cluster: 30S ribosomal protein S4; n=14;
Bacteria|Rep: 30S ribosomal protein S4 - Thermotoga
maritima
Length = 209
Score = 37.1 bits (82), Expect = 0.26
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 159
LE RL V++ G A + AR L+ H V + VNIPS+++R
Sbjct: 96 LEARLDNVVYRMGFAINRRQARQLVNHGHFLVNGKKVNIPSYLLR 140
>UniRef50_O51560 Cluster: 30S ribosomal protein S4; n=3; Borrelia
burgdorferi group|Rep: 30S ribosomal protein S4 -
Borrelia burgdorferi (Lyme disease spirochete)
Length = 209
Score = 37.1 bits (82), Expect = 0.26
Identities = 21/54 (38%), Positives = 30/54 (55%)
Frame = -3
Query: 320 VLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 159
V G + LERR+ V++AG A S HAR ++ I + + V IPS I+R
Sbjct: 85 VTGDNLLSILERRIDNVVYRAGFAISRAHARQIVSHGIIILNGRRVTIPSIILR 138
>UniRef50_Q6MIP0 Cluster: 30S ribosomal protein S4 B; n=1;
Bdellovibrio bacteriovorus|Rep: 30S ribosomal protein S4
B - Bdellovibrio bacteriovorus
Length = 208
Score = 37.1 bits (82), Expect = 0.26
Identities = 36/124 (29%), Positives = 56/124 (45%)
Frame = -3
Query: 527 DLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXXL 348
+L +G+ G +R ++ L R RK + L L+EK R G
Sbjct: 19 ELPGMGKAGALERRPYPPGQHGLQR-RKYSEFALQLEEKQKLRFHYG-LREEQFRRLINK 76
Query: 347 DEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
+K ++V L + LE+RL VF+ G A SI AR L+ + V + VNI S
Sbjct: 77 AKKSKATNWVEALV--NLLEKRLDNVVFRLGFASSIPAARQLVSHGKVLVNGKKVNIGSQ 134
Query: 167 IVRL 156
I+++
Sbjct: 135 IIKV 138
>UniRef50_Q5LNM2 Cluster: 30S ribosomal protein S4; n=86;
Bacteria|Rep: 30S ribosomal protein S4 - Silicibacter
pomeroyi
Length = 206
Score = 36.3 bits (80), Expect = 0.45
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 159
G + LERRL V++A ++ AR + H+ V + VNIPS+ V+
Sbjct: 85 GENLIGLLERRLDAVVYRAKFVPTVFAARQFVNHGHVLVNGKRVNIPSYRVK 136
>UniRef50_Q92BB2 Cluster: 30S ribosomal protein S4; n=35;
Bacteria|Rep: 30S ribosomal protein S4 - Listeria
innocua
Length = 200
Score = 36.3 bits (80), Expect = 0.45
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
LE+RL V++ GLA++ AR L+ HI V + V+IPS+ V
Sbjct: 90 LEQRLDNIVYRLGLARTRRAARQLVNHGHITVDGKRVDIPSYQV 133
>UniRef50_Q06SJ3 Cluster: Chloroplast 30S ribosomal protein S4; n=1;
Stigeoclonium helveticum|Rep: Chloroplast 30S ribosomal
protein S4 - Stigeoclonium helveticum (Green alga)
Length = 2922
Score = 36.3 bits (80), Expect = 0.45
Identities = 19/42 (45%), Positives = 25/42 (59%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
LE RL VF+ +A +I AR LI HI + K+ V IPS+
Sbjct: 109 LEMRLDNIVFRLHMAPTIKAARQLISHGHILINKKKVTIPSY 150
>UniRef50_Q2JFE9 Cluster: 30S ribosomal protein S4; n=25;
Bacteria|Rep: 30S ribosomal protein S4 - Frankia sp.
(strain CcI3)
Length = 209
Score = 35.9 bits (79), Expect = 0.59
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
G ++ LE RL V++ G A S AR +R H++V + V+IPS+
Sbjct: 89 GDELLKILESRLDNVVYRGGFAPSRDAARQAVRHGHVQVNGRKVDIPSY 137
>UniRef50_UPI0000E4A461 Cluster: PREDICTED: similar to MGC69249
protein; n=2; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to MGC69249 protein -
Strongylocentrotus purpuratus
Length = 145
Score = 35.5 bits (78), Expect = 0.78
Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 2/106 (1%)
Frame = -3
Query: 473 VKYT-LAR-IRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXXLDEKQMKLDYVLGLKIE 300
+KY L+R +R A ++ LD KDP R + + KQ L +
Sbjct: 1 MKYNKLSRHVRTLANKIKQLDSKDPFRNQCTSQMLKKLYNMGIVPTKQ-NLALCDNVSAS 59
Query: 299 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
F RRL + K +A+++ A ++ HIRV ++V P+F+V
Sbjct: 60 SFCRRRLPVVMVKIKMAETVESAVKFVQHGHIRVGPELVLDPAFLV 105
>UniRef50_O22029 Cluster: Chloroplast 30S ribosomal protein S4; n=3;
Cyanidiaceae|Rep: Chloroplast 30S ribosomal protein S4 -
Cyanidium caldarium
Length = 192
Score = 35.5 bits (78), Expect = 0.78
Identities = 18/49 (36%), Positives = 28/49 (57%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
GL + LE RL V++AG A ++ AR L+ H++V + V I S+
Sbjct: 82 GLALLTMLETRLDHLVYRAGFAPTLPAARQLVNHGHVKVNGKKVTIASW 130
>UniRef50_P46743 Cluster: Mitochondrial ribosomal protein S4; n=1;
Prototheca wickerhamii|Rep: Mitochondrial ribosomal
protein S4 - Prototheca wickerhamii
Length = 511
Score = 35.1 bits (77), Expect = 1.0
Identities = 27/95 (28%), Positives = 44/95 (46%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 114
+E+RL ++++G K+I AR R I V +V IPS I L+SG I S K+
Sbjct: 200 IEKRLDVVLYRSGFTKTIVAARQACRHSQIYVNSKVCRIPSTI--LESGDII--SYKNQL 255
Query: 113 GGGRPGRVKRKNLRKGQGGGATNDEEED*TNKLIN 9
+ +K + N+ + +NK+ N
Sbjct: 256 DSLKTAEIKNNLFSNINTNVSGNEVSNNVSNKVSN 290
>UniRef50_A6YGA2 Cluster: Ribosomal protein S4; n=30; cellular
organisms|Rep: Ribosomal protein S4 - Leptosira
terrestris (Pleurastrum terrestre)
Length = 221
Score = 34.7 bits (76), Expect = 1.4
Identities = 19/49 (38%), Positives = 27/49 (55%)
Frame = -3
Query: 314 GLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSF 168
G + LE RL VF+ G+A +I AR L+ HI V + V+I S+
Sbjct: 94 GETLLQLLEMRLDNIVFRLGMAPTIPAARQLVNHGHIVVNNKKVDISSY 142
>UniRef50_Q8IKM0 Cluster: Ribosomal protein S4, putative; n=1;
Plasmodium falciparum 3D7|Rep: Ribosomal protein S4,
putative - Plasmodium falciparum (isolate 3D7)
Length = 159
Score = 34.7 bits (76), Expect = 1.4
Identities = 17/61 (27%), Positives = 31/61 (50%)
Frame = -3
Query: 311 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDF 132
+ + F RRL +F+ ++I A I+ +IR+ V+N PSF + + HI +
Sbjct: 75 ITVSSFCRRRLAVLLFRLKFVQTIKLAITYIQHGNIRIGNNVINNPSFHINRNMEDHIKW 134
Query: 131 S 129
+
Sbjct: 135 A 135
>UniRef50_Q6MYA2 Cluster: Zinc finger protein, putative; n=2;
Aspergillus fumigatus|Rep: Zinc finger protein, putative
- Aspergillus fumigatus (Sartorya fumigata)
Length = 1650
Score = 34.3 bits (75), Expect = 1.8
Identities = 17/39 (43%), Positives = 24/39 (61%)
Frame = +3
Query: 105 AAAERRLQREVNVLAGVQADDERRNVHHLLADTNMPLSD 221
A AER E +VLA V + R +V ++L+ TN+PL D
Sbjct: 519 AQAERLFALEASVLASVADSEARASVSNILSKTNLPLLD 557
>UniRef50_Q9Z5U7 Cluster: 30S ribosomal protein S4; n=5;
Alphaproteobacteria|Rep: 30S ribosomal protein S4 -
Zymomonas mobilis
Length = 204
Score = 34.3 bits (75), Expect = 1.8
Identities = 23/58 (39%), Positives = 30/58 (51%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKS 120
LERRL V++A A +I AR L+ HIRV NI S R++ G I K+
Sbjct: 92 LERRLDMIVYRAKFAPTIFAARQLVSHGHIRVNGVKCNIAS--RRVNPGDEISLGSKA 147
>UniRef50_UPI0000084740 Cluster: lethal (2) 35Bb CG31834-PA; n=1;
Drosophila melanogaster|Rep: lethal (2) 35Bb CG31834-PA
- Drosophila melanogaster
Length = 291
Score = 33.9 bits (74), Expect = 2.4
Identities = 22/54 (40%), Positives = 30/54 (55%)
Frame = -3
Query: 305 IEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGK 144
I DF RL TQ F+ KSIH++ +++ +KQ+ NIP FI R GK
Sbjct: 149 IADFGTARL-TQ-FRRTSTKSIHNSTASCQRQKEEKKKQIQNIPRFIPRKKKGK 200
>UniRef50_UPI0000498936 Cluster: U3 small nucleolar
ribonucleoprotein subunit; n=2; Entamoeba histolytica
HM-1:IMSS|Rep: U3 small nucleolar ribonucleoprotein
subunit - Entamoeba histolytica HM-1:IMSS
Length = 186
Score = 33.5 bits (73), Expect = 3.1
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = -3
Query: 299 DFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
DF RRL V + + A LI+Q HI+V V+ P++IV
Sbjct: 105 DFCRRRLAIVVKAKKMVTDVTQAETLIQQGHIKVGPDVIRNPAYIV 150
>UniRef50_Q8IQ18 Cluster: CG33196-PB; n=10; Endopterygota|Rep:
CG33196-PB - Drosophila melanogaster (Fruit fly)
Length = 23015
Score = 33.1 bits (72), Expect = 4.2
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 300 GLLGAPSSDSGVQGWSCEVNPSCPHLDQTEAYSC 199
GL G P+S G G+ C+V+ CP+ Y C
Sbjct: 9018 GLSGDPTSVIGCHGYECQVDADCPNSKACMGYRC 9051
>UniRef50_Q5KLM6 Cluster: Nam9 protein, mitochondrial, putative;
n=2; Filobasidiella neoformans|Rep: Nam9 protein,
mitochondrial, putative - Cryptococcus neoformans
(Filobasidiella neoformans)
Length = 317
Score = 33.1 bits (72), Expect = 4.2
Identities = 13/44 (29%), Positives = 28/44 (63%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
+ERRL +F++ A+++ AR + Q H+++ QV+ P+ ++
Sbjct: 140 IERRLDVLIFRSCFAQNVWEARRYVVQGHVKLNGQVMRNPNIML 183
>UniRef50_Q2UJB9 Cluster: Predicted protein; n=1; Aspergillus
oryzae|Rep: Predicted protein - Aspergillus oryzae
Length = 950
Score = 33.1 bits (72), Expect = 4.2
Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Frame = +2
Query: 173 KECSPPACGHEYASV*SRCGHDGLTSQDQP*TPESEDGAPRSPQSSNRAHNPVSSVSHQA 352
++ + PA E GHD + + + P D +P S +H P S+ H
Sbjct: 564 EQVNTPAPQPEQPKDHEESGHDNQSHEIESPKPTGADSSPHEDPSREDSHGPSSTPVHGQ 623
Query: 353 LRP*PDDVVEHCLQTIS*DPSRRVST--VHGQP 445
P D + + ++ S + S S+ VHGQP
Sbjct: 624 PEPTGVDGIHNQEESSSHEDSHGPSSTPVHGQP 656
>UniRef50_UPI0000E4A709 Cluster: PREDICTED: similar to EGF-like
protein; n=5; Strongylocentrotus purpuratus|Rep:
PREDICTED: similar to EGF-like protein -
Strongylocentrotus purpuratus
Length = 1686
Score = 32.3 bits (70), Expect = 7.3
Identities = 15/33 (45%), Positives = 18/33 (54%)
Frame = -2
Query: 279 SDSGVQGWSCEVNPSCPHLDQTEAYSCPQAGGE 181
SDSG C+V S P DQ +YS P GG+
Sbjct: 968 SDSGQASCLCDVGFSGPTCDQVSSYSIPMFGGD 1000
>UniRef50_A2XYL0 Cluster: Putative uncharacterized protein; n=2;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. indica (Rice)
Length = 157
Score = 32.3 bits (70), Expect = 7.3
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = -3
Query: 287 RRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
RRL T + K A+ + A I+Q H+RV + V P+F+V
Sbjct: 82 RRLATVMVKLKFAEHLKEAVTYIQQGHVRVGPETVTDPAFLV 123
>UniRef50_A2E3D0 Cluster: S4 domain containing protein; n=1;
Trichomonas vaginalis G3|Rep: S4 domain containing
protein - Trichomonas vaginalis G3
Length = 182
Score = 32.3 bits (70), Expect = 7.3
Identities = 26/131 (19%), Positives = 54/131 (41%)
Frame = -3
Query: 521 KIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXXLDE 342
+++G Y L N E + + +I++ L + +D R+ ++
Sbjct: 31 QVVGIYCLDNSEEYHQYNRLVGKIQRFTNTLRQMGPEDKVRIDLTKQFVDRVYKLGIIET 90
Query: 341 KQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
Q L + + +RRL + + I A L+RQ H+R+ VV P+ +V
Sbjct: 91 PQ--LSECEKINVVAICKRRLPVIMVNLKFCQRISEADKLVRQGHVRIGPDVVTNPATLV 148
Query: 161 RLDSGKHIDFS 129
+ +I+++
Sbjct: 149 SKEMEDYINWA 159
>UniRef50_A0BWL3 Cluster: Chromosome undetermined scaffold_132, whole
genome shotgun sequence; n=2; Paramecium tetraurelia|Rep:
Chromosome undetermined scaffold_132, whole genome
shotgun sequence - Paramecium tetraurelia
Length = 1572
Score = 32.3 bits (70), Expect = 7.3
Identities = 27/96 (28%), Positives = 45/96 (46%), Gaps = 1/96 (1%)
Frame = +3
Query: 252 KTSLEHLSLKTALQEVLNLQTEHIIQ-FHLFLIKHSDPNQTT**SIAFKQSLRILLVECQ 428
+ L H L T LQE+ NL E I++ H F+ Q+ + L + + CQ
Sbjct: 999 REKLHHSELTTLLQELQNLINEPIVESLHGFVSLIQCVYQSE--YADLNRVLTLFQLICQ 1056
Query: 429 QFTGSLTDASERVLDAPHFTLVAETILSDDLQVLIK 536
Q GS ++ + L+A+ LSD L++L++
Sbjct: 1057 QGAGSSSEELINSNLSKAMDLLAQNNLSDSLEILLE 1092
>UniRef50_UPI000023DE23 Cluster: hypothetical protein FG05327.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG05327.1 - Gibberella zeae PH-1
Length = 514
Score = 31.9 bits (69), Expect = 9.6
Identities = 20/63 (31%), Positives = 31/63 (49%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVRLDSGKHIDFSLKSPF 114
LERRL T VF+A A S+ AR + ++V + + PS+ + +D K +
Sbjct: 160 LERRLDTAVFRAMFASSVRQARQFVIHGAVKVNGKKMVHPSYALNPGDMFQVDIE-KVLY 218
Query: 113 GGG 105
G G
Sbjct: 219 GTG 221
>UniRef50_Q4RR73 Cluster: Chromosome 14 SCAF15003, whole genome
shotgun sequence; n=2; cellular organisms|Rep:
Chromosome 14 SCAF15003, whole genome shotgun sequence -
Tetraodon nigroviridis (Green puffer)
Length = 1824
Score = 31.9 bits (69), Expect = 9.6
Identities = 16/54 (29%), Positives = 22/54 (40%)
Frame = -2
Query: 240 PSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLSEVAVRRRPARSRQEEE 79
P CPH + + + P A G VH +H L+S R SR +E
Sbjct: 344 PQCPHCQEYDIKNIPGAHGARRCVHTSSSSASSHTLVSRKTQVERQTLSRSSDE 397
>UniRef50_A6YEB5 Cluster: Ribosomal protein S4; n=1; Chlorokybus
atmophyticus|Rep: Ribosomal protein S4 - Chlorokybus
atmophyticus (Soil alga)
Length = 267
Score = 31.9 bits (69), Expect = 9.6
Identities = 15/45 (33%), Positives = 25/45 (55%)
Frame = -3
Query: 293 LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIVR 159
LERRL + + ++ AR LI + I V + VNI S++++
Sbjct: 94 LERRLDVVLLRLKYCSTLSEARQLISHKKILVNNETVNISSYLLK 138
>UniRef50_Q7SB57 Cluster: Putative uncharacterized protein
NCU06256.1; n=1; Neurospora crassa|Rep: Putative
uncharacterized protein NCU06256.1 - Neurospora crassa
Length = 959
Score = 31.9 bits (69), Expect = 9.6
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = -2
Query: 261 GWSCEVNPSCPHLDQTEAYSCPQAGGE 181
GW CE+N C HL Q E AG E
Sbjct: 892 GWDCELNSDCSHLSQGEERGWRFAGDE 918
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 467,715,153
Number of Sequences: 1657284
Number of extensions: 9200844
Number of successful extensions: 28329
Number of sequences better than 10.0: 94
Number of HSP's better than 10.0 without gapping: 27264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28270
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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