Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K08
(538 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein S9|Schiz... 254 6e-69
SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein S9|Schiz... 253 1e-68
SPAC19D5.05c |||U3 snoRNP-associated protein Imp3 |Schizosacchar... 46 4e-06
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe... 28 0.77
SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1||... 27 1.3
SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated |Schizosaccharom... 27 2.3
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom... 26 4.1
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 5.4
SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces pomb... 25 7.2
>SPBC29A3.12 |rps902|rps9-2, rps9b|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 2|||Manual
Length = 192
Score = 254 bits (622), Expect = 6e-69
Identities = 121/169 (71%), Positives = 138/169 (81%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXX 357
LD +LK+ GEYGLRNK E+WRV TL++IR+AARELLTLDEKDPKRLFEGNA
Sbjct: 24 LDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRL 83
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+
Sbjct: 84 GILDESRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNV 143
Query: 176 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 30
PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR Q GG + EE+
Sbjct: 144 PSFVVRLDAQKHIDFALSSPYGGGRPGRCKRKRLRSQQEGGEGEEAEEE 192
>SPAC24H6.07 |rps901|rps9-1, rps9a|40S ribosomal protein
S9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 191
Score = 253 bits (620), Expect = 1e-68
Identities = 121/168 (72%), Positives = 137/168 (81%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXX 357
LD +LK+ GEYGLRNK E+WRV TL++IR+AARELLTLDEKDPKRLFEGNA
Sbjct: 24 LDAELKLAGEYGLRNKHEIWRVALTLSKIRRAARELLTLDEKDPKRLFEGNAIIRRLVRL 83
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
LDE +MKLDYVL L+IEDFLERRLQTQVFK GLAKSIHHAR+LI QRHIRV KQ+VN+
Sbjct: 84 GILDETRMKLDYVLALRIEDFLERRLQTQVFKLGLAKSIHHARVLIFQRHIRVGKQIVNV 143
Query: 176 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEE 33
PSF+VRLD+ KHIDF+L SP+GGGRPGR KRK LR +GG EEE
Sbjct: 144 PSFVVRLDTQKHIDFALSSPYGGGRPGRCKRKRLRSQEGGEGEEAEEE 191
>SPAC19D5.05c |||U3 snoRNP-associated protein Imp3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 183
Score = 46.0 bits (104), Expect = 4e-06
Identities = 30/123 (24%), Positives = 50/123 (40%)
Frame = -3
Query: 530 QDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXX 351
+D+ ++ Y + + E + + R+ A L LD DP RL N
Sbjct: 28 RDVMVMRRYHISKREEYQKYNIICGKFRQLAHRLSLLDPTDPFRLQYENLLLEKLFDMGI 87
Query: 350 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 171
L K D + RRL + K +++ + A LI Q H+RV V+ P+
Sbjct: 88 LPSKSKMSDIENKANVSAICRRRLPVIMCKLRMSQVVSEATRLIEQGHVRVGPHVITDPA 147
Query: 170 FIV 162
++V
Sbjct: 148 YLV 150
>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 28.3 bits (60), Expect = 0.77
Identities = 17/43 (39%), Positives = 21/43 (48%)
Frame = +3
Query: 381 SIAFKQSLRILLVECQQFTGSLTDASERVLDAPHFTLVAETIL 509
SI F+ S RIL Q T LT S + HF ++ TIL
Sbjct: 18 SIFFQGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQSTIL 60
>SPAC3H5.11 |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 393
Score = 27.5 bits (58), Expect = 1.3
Identities = 23/85 (27%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
Frame = +3
Query: 279 KTALQEVLNLQTEHI-IQFHLFLIKHSDPNQTT**SIAFKQSLRILLVECQQFTGSLTDA 455
KT++ E+ N H+ +F ++K + Q QSL E FT SL
Sbjct: 187 KTSILEICNEMYVHLRTRFECRVMKKKNRTQWINIDEHLSQSLHATDTETHTFTDSLVVL 246
Query: 456 SERVLDAPHFTLVAETILSDDLQVL 530
+E V+D T +++ +L D + L
Sbjct: 247 NEVVIDRGPNTAMSDIMLYVDSKYL 271
>SPAC4F10.12 |fta1|sma1|Sim4 and Mal2 associated
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 280
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = -3
Query: 335 MKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHI 204
+++D L + +E FL++ TQ+ +A I + I Q H+
Sbjct: 132 VRMDGALWMAVEQFLQQEFDTQILPCLIAPEILLEFLKIWQNHV 175
>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 703
Score = 25.8 bits (54), Expect = 4.1
Identities = 14/27 (51%), Positives = 18/27 (66%)
Frame = +2
Query: 281 DGAPRSPQSSNRAHNPVSSVSHQALRP 361
DGA S Q+ AHNP +SVS + +RP
Sbjct: 90 DGA--SSQNDAFAHNPSTSVSVELVRP 114
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = -2
Query: 246 VNPSCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLSEVAVRRRPARSRQEEEPA 73
V+ + P +++ + P GG HS + RP R + LLS A + + E+P+
Sbjct: 113 VSVNAPIVNEV-SLQAPMKGGSHSSIVRPQAKRSSSRLLSTDAFSQFISSFSPPEKPS 169
>SPAC2G11.10c |||URM1 activating enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 7.2
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = -2
Query: 273 SGVQGWSCEVNPSCP 229
+G++GWS EV+P+ P
Sbjct: 385 AGLKGWSTEVDPNFP 399
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,942
Number of Sequences: 5004
Number of extensions: 35126
Number of successful extensions: 118
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -