Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K08
(538 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.) 283 8e-77
SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 3e-04
SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11) 29 2.4
SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86) 29 3.2
SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.7
>SB_46749| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 190
Score = 283 bits (693), Expect = 8e-77
Identities = 134/169 (79%), Positives = 149/169 (88%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXX 357
L+Q+LKIIGEYGLRNKREVWRVK TLA+IRKAARELLTL+EKDP+RLFEGNA
Sbjct: 22 LNQELKIIGEYGLRNKREVWRVKLTLAKIRKAARELLTLEEKDPRRLFEGNALLRRLVRI 81
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
LDE + KLDYVLGL+IEDFLERRLQTQVFK GLAKSIHHAR+LIRQRHIRVRKQ+VN+
Sbjct: 82 GVLDESRKKLDYVLGLRIEDFLERRLQTQVFKLGLAKSIHHARVLIRQRHIRVRKQLVNV 141
Query: 176 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLRKGQGGGATNDEEED 30
PSF+VRLDS KHIDFSL SP+GGGRPGRVKRKN++KGQGG DE+ED
Sbjct: 142 PSFVVRLDSQKHIDFSLNSPYGGGRPGRVKRKNMKKGQGGSGGEDEDED 190
>SB_53825| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 41.9 bits (94), Expect = 3e-04
Identities = 28/123 (22%), Positives = 54/123 (43%)
Frame = -3
Query: 530 QDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXXXX 351
+++K++ +Y ++ + + + I+ A ++ LD KDP R+ E
Sbjct: 28 REVKVLRKYHIQKREDYTKYNKLSGLIKSLANKIKDLDPKDPYRV-EATEQILEKLHNMG 86
Query: 350 LDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPS 171
L + L + F RRL + +A+ + A I Q H+RV +V+ P+
Sbjct: 87 LISTKKNLGQCNKVNASSFCRRRLPVVMVNLKMAQVVKDAVKYIEQGHVRVGPEVIMDPA 146
Query: 170 FIV 162
F+V
Sbjct: 147 FLV 149
>SB_24053| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2557
Score = 29.1 bits (62), Expect = 2.4
Identities = 32/133 (24%), Positives = 56/133 (42%), Gaps = 11/133 (8%)
Frame = -3
Query: 500 LRNKREVWRVKYTLARIRKAARELLTLD--EKDPKR--LFEGNA----XXXXXXXXXXLD 345
L N E W + AR+R+ +L+ LD +KD KR + E A D
Sbjct: 1180 LTNTAEAWTQEQREARLRELKDKLVALDPADKDQKRSVMLEAAAIKLVSRKAHLAKSRED 1239
Query: 344 EKQMKLDYVLGLKIEDF-LERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQ--VVNIP 174
++ D V+ I D E+ +++ A + + I +++ HI R Q + N+
Sbjct: 1240 GSEVPRDEVMISLIADLQQEQDKESEGVLASMQEKDKDGLIALQKEHIAARAQDTLANVR 1299
Query: 173 SFIVRLDSGKHID 135
+ + R + G D
Sbjct: 1300 AVLTRGEEGVAAD 1312
>SB_13124| Best HMM Match : Collagen (HMM E-Value=2.3e-11)
Length = 476
Score = 29.1 bits (62), Expect = 2.4
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Frame = +2
Query: 257 QP*TPESEDGAPRSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS*DPSRRVS--- 427
+P TP ++ + P +SN +HN ++ LR + V HC+ ++ SR VS
Sbjct: 408 EPGTPGAKGESGGPPFASNASHNELNRTLCHTLRHSGSNTVTHCVTRVT-QLSRTVSRTV 466
Query: 428 TVHGQP 445
VH P
Sbjct: 467 QVHKDP 472
>SB_26881| Best HMM Match : Atrophin-1 (HMM E-Value=0.86)
Length = 1110
Score = 28.7 bits (61), Expect = 3.2
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = -2
Query: 237 SCPHLDQTEAYSCPQAGGEHSFVHRPPGLRQAH*LLSEVAVRRRPARSRQEE 82
S PHL+ YS P HSF+ L L +A+ ++ AR + +E
Sbjct: 306 SHPHLEAVRTYSLPFESVNHSFLLANNSLTVPVTDLRHLAITKQQARQKDQE 357
>SB_2549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1155
Score = 28.3 bits (60), Expect = 4.2
Identities = 21/84 (25%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -3
Query: 326 DYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI-PSFIVRLDS 150
D + G++ D+ L K +A L QR + V K VV F+++ +
Sbjct: 128 DTLRGVQKHDYARLNLDAPALKNPIALPFMRRHQLTPQRIMGVVKTVVQSNEQFVLQGNF 187
Query: 149 GKHIDFSLKSPFGGGRPGRVKRKN 78
H+ P+GGG+ G+ K+ +
Sbjct: 188 HLHV-VRTHMPYGGGKRGKSKKNS 210
>SB_52815| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 540
Score = 27.1 bits (57), Expect = 9.7
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +3
Query: 81 LPLDATGPAAAERRLQREVNVLAGVQADDERRNVHHLLADTNMPLSDQDAGM 236
LP T PAA + L +V + V+ + RN+H L N+ L+ D G+
Sbjct: 479 LPAATTVPAAGMQNLTPQVPIGKWVELREISRNIH--LLTGNLQLNRNDIGV 528
>SB_42415| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 806
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 143 ACRSPGGR*TKECSPPACGHEYAS 214
A +PGGR EC P CG ++ S
Sbjct: 530 AVLNPGGRCPIECQNPGCGIKFCS 553
>SB_33019| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 877
Score = 27.1 bits (57), Expect = 9.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +2
Query: 266 TPESEDGAPRSPQSSNRAHNP 328
TPE + G PR+P+ S R +P
Sbjct: 476 TPEMKRGKPRTPEKSRRRKSP 496
>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1918
Score = 27.1 bits (57), Expect = 9.7
Identities = 18/69 (26%), Positives = 33/69 (47%)
Frame = +3
Query: 102 PAAAERRLQREVNVLAGVQADDERRNVHHLLADTNMPLSDQDAGMMD*LRKTSLEHLSLK 281
P+ R EVN+L V E+ N+ HL+A ++ L QD + L + + +
Sbjct: 1415 PSCFVRIYSSEVNILDAV----EKENLAHLMASMHLALRHQDGADKESGTHGHLTNTTFE 1470
Query: 282 TALQEVLNL 308
+++ +NL
Sbjct: 1471 IFVEKFINL 1479
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,806,509
Number of Sequences: 59808
Number of extensions: 305701
Number of successful extensions: 779
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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