Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K08
(538 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S ri... 244 4e-65
At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S ri... 241 2e-64
At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protei... 32 0.21
At4g19870.2 68417.m02913 kelch repeat-containing F-box family pr... 29 2.0
At4g19870.1 68417.m02912 kelch repeat-containing F-box family pr... 29 2.0
At4g27150.1 68417.m03901 2S seed storage protein 2 / 2S albumin ... 28 3.4
At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 fam... 28 3.4
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 28 4.5
At5g66700.1 68418.m08408 homeobox-leucine zipper family protein ... 27 7.9
At4g27170.1 68417.m03903 2S seed storage protein 4 / 2S albumin ... 27 7.9
At1g56250.1 68414.m06466 SKP1 interacting partner 3-related cont... 27 7.9
>At5g15200.1 68418.m01781 40S ribosomal protein S9 (RPS9B) 40S
ribosomal protein S9, Chlamydomonas sp., EMBL:AU066528
Length = 198
Score = 244 bits (596), Expect = 4e-65
Identities = 119/173 (68%), Positives = 141/173 (81%), Gaps = 5/173 (2%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXX 357
LD +LK++GEYGLRNKRE+WRV+Y+L+RIR AAR+LLTLDEK P+R+FEG A
Sbjct: 26 LDSELKLVGEYGLRNKRELWRVQYSLSRIRNAARDLLTLDEKSPRRIFEGEALLRRMNRY 85
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHH+R+LIRQRHIRV KQ+VNI
Sbjct: 86 GLLDESQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHSRVLIRQRHIRVGKQLVNI 145
Query: 176 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKN----LRKGQGGG-ATNDEEE 33
PSF+VRLDS KHIDF+L SPFGGGRPGRVKR+N +K GGG A D+EE
Sbjct: 146 PSFMVRLDSQKHIDFALTSPFGGGRPGRVKRRNEKSASKKASGGGDADGDDEE 198
>At5g39850.1 68418.m04829 40S ribosomal protein S9 (RPS9C) 40S
ribosomal protein S9 - Chlamydomonas sp.,EMBL:AU066528
Length = 197
Score = 241 bits (590), Expect = 2e-64
Identities = 117/172 (68%), Positives = 139/172 (80%), Gaps = 4/172 (2%)
Frame = -3
Query: 536 LDQDLKIIGEYGLRNKREVWRVKYTLARIRKAARELLTLDEKDPKRLFEGNAXXXXXXXX 357
LD +LK++GEYGLR KRE+WRV+YTL+RIR AARELLTLDEK+P+R+FEG A
Sbjct: 26 LDAELKLVGEYGLRCKRELWRVQYTLSRIRNAARELLTLDEKNPRRIFEGEALLRRMNRY 85
Query: 356 XXLDEKQMKLDYVLGLKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNI 177
LDE Q KLDYVL L +E+FLERRLQT VFK+G+AKSIHHAR+LIRQRHIRV +Q+VNI
Sbjct: 86 GLLDETQNKLDYVLALTVENFLERRLQTIVFKSGMAKSIHHARVLIRQRHIRVGRQLVNI 145
Query: 176 PSFIVRLDSGKHIDFSLKSPFGGGRPGRVKRKNLR----KGQGGGATNDEEE 33
PSF+VR++S KH+DFSL SPFGGGRPGRVKR+N R K GG D+EE
Sbjct: 146 PSFMVRVESQKHVDFSLTSPFGGGRPGRVKRRNERAGAKKASGGDGDEDDEE 197
>At5g15750.1 68418.m01842 RNA-binding S4 domain-containing protein
40S RIBOSOMAL PROTEINs - different species
Length = 182
Score = 32.3 bits (70), Expect = 0.21
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = -3
Query: 311 LKIEDFLERRLQTQVFKAGLAKSIHHARILIRQRHIRVRKQVVNIPSFIV 162
L + F RRL T + A+ A I Q H+RV + + P+F+V
Sbjct: 99 LSVSSFCRRRLSTVLVHLKFAEHHKEAVTYIEQGHVRVGPETITDPAFLV 148
>At4g19870.2 68417.m02913 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 400
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 293 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS 403
+ + + A +P S S +L PD++VE+CL IS
Sbjct: 10 KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARIS 46
>At4g19870.1 68417.m02912 kelch repeat-containing F-box family
protein contains F-box domain Pfam:PF00646 and Kelch
motif Pfam:PF01344
Length = 400
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +2
Query: 293 RSPQSSNRAHNPVSSVSHQALRP*PDDVVEHCLQTIS 403
+ + + A +P S S +L PD++VE+CL IS
Sbjct: 10 KKTKRTTNASSPTPSSSSPSLSSLPDEIVENCLARIS 46
>At4g27150.1 68417.m03901 2S seed storage protein 2 / 2S albumin
storage protein / NWMU2-2S albumin 2 identical to
SP|P15458
Length = 170
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = -3
Query: 95 RVKRKNLRKGQGGGATNDEEED*TNKLINPR 3
++ R +R+G+GGG + D+E D + + NP+
Sbjct: 60 KLMRMQMRQGRGGGPSLDDEFDLEDDIENPQ 90
>At3g29060.1 68416.m03635 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 794
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +2
Query: 287 APRSPQSSNRAHNPVSSVSH 346
A RSP+ S++ HNP+SS H
Sbjct: 93 ASRSPKKSHKHHNPLSSKRH 112
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
CREB-binding protein GB:S39162 from [Homo sapiens]
Length = 1670
Score = 27.9 bits (59), Expect = 4.5
Identities = 14/35 (40%), Positives = 15/35 (42%)
Frame = -2
Query: 264 QGWSCEVNPSCPHLDQTEAYSCPQAGGEHSFVHRP 160
QGW CEV CP D A HS + RP
Sbjct: 1515 QGWRCEV---CPDYDVCNACYSKGINHPHSIISRP 1546
>At5g66700.1 68418.m08408 homeobox-leucine zipper family protein
similar to Homeobox-leucine zipper protein HAT5 (HD-ZIP
protein 5) (SP:Q02283) [Arabidopsis thaliana]; contains
Pfam PF00046: Homeobox domain
Length = 228
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -3
Query: 113 GGGRPGRVKRKNLRKGQGGGATNDEE 36
GG VKR+ R+ +G ATN+E+
Sbjct: 37 GGEESKPVKRRRKRRSKGSSATNEED 62
>At4g27170.1 68417.m03903 2S seed storage protein 4 / 2S albumin
storage protein / NWMU2-2S albumin 4 identical to
SP|P15460
Length = 166
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = -3
Query: 95 RVKRKNLRKGQGGGATNDEEED*TNKLINPR 3
R RK + +G+GGG + D+E D + + NP+
Sbjct: 60 RWMRKQMWQGRGGGPSLDDEFDMEDDIENPQ 90
>At1g56250.1 68414.m06466 SKP1 interacting partner 3-related
contains similarity to SKP1 interacting partner 3
GI:10716951 from [Arabidopsis thaliana]
Length = 282
Score = 27.1 bits (57), Expect = 7.9
Identities = 19/45 (42%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Frame = -3
Query: 512 GEYGLRNKREVWRVKYTLARIRKAARELLTLDEK--DPKRLFEGN 384
G YGL +K +I K+A L LDEK KRLF GN
Sbjct: 165 GAYGLDLVPAETSIKSKNGQISKSATYLCCLDEKKQQMKRLFYGN 209
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,197,655
Number of Sequences: 28952
Number of extensions: 204501
Number of successful extensions: 570
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 554
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 567
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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