Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K07
(430 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23G7.05 |sui1|psu1|translation initiation factor eIF1|Schizo... 117 9e-28
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 33 0.025
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 2.2
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 26 2.9
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 25 3.8
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo... 25 6.6
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 25 6.6
SPAPYUG7.02c |sin1||stress activated MAP kinase interacting prot... 25 6.6
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 24 8.7
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos... 24 8.7
>SPBC23G7.05 |sui1|psu1|translation initiation factor
eIF1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 109
Score = 117 bits (281), Expect = 9e-28
Identities = 56/87 (64%), Positives = 69/87 (79%), Gaps = 1/87 (1%)
Frame = +1
Query: 172 SIQNLNTFDPFADAIKSSEDDVQD-GLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 348
+IQN NT DPFAD + +DD Q +H+RIQQRNGRKTLTTVQGL E+D K+I+RA
Sbjct: 3 AIQNFNTVDPFAD---TGDDDAQPLNNIHIRIQQRNGRKTLTTVQGLPREFDQKRILRAL 59
Query: 349 KKEFACNGTVVEHPEYGEVLQLQGDQR 429
KK+FACNGT+V+ + GEV+QLQGDQR
Sbjct: 60 KKDFACNGTIVKDDDLGEVIQLQGDQR 86
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 32.7 bits (71), Expect = 0.025
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +1
Query: 250 VHVRIQQRNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGD 423
V ++ +R RK +TTVQGL + + KK + +FA +V + + + + +QGD
Sbjct: 99 VLIKTIERTKRKRVTTVQGLDAFGIETKKAAKMLANKFATGASVTKTADKKDEIVVQGD 157
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 26.2 bits (55), Expect = 2.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -1
Query: 397 RTPGAPQRYRCTRTPSCMPARSSS---SHIPRTSPAPWSMFY 281
R+ P +Y+C SC AR+SS + +P S WS+F+
Sbjct: 409 RSRSCPSKYQCY---SCRCARNSSLEFTSLPGQSSDTWSIFW 447
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 25.8 bits (54), Expect = 2.9
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Frame = -1
Query: 364 TRTPSCMPAR-SSSSHIPRTSPAP 296
+R+PS P S+ HIPR SP+P
Sbjct: 385 SRSPSVDPNTVKSAQHIPRMSPSP 408
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 25.4 bits (53), Expect = 3.8
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -1
Query: 409 AAPRRTPGAPQRYRCTRTPSCMPARSSSSHIPRTS 305
A+PR TP P + + S +P + SS P T+
Sbjct: 33 ASPRLTPNLPPPFSVHQLQSFVPPQPPSSSSPSTT 67
>SPAC630.05 |gyp7||GTPase activating protein Gyp7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 213 SIGEWVECVQILDGHTIERRCSLF 142
SI EWVE Q LD R CS++
Sbjct: 102 SIREWVEIPQHLDYSFSVRLCSIY 125
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 4/30 (13%)
Frame = +1
Query: 292 TTVQGLSSEYDL----KKIVRACKKEFACN 369
+T+ GL++ Y + K V+AC K F CN
Sbjct: 122 STLSGLAASYVILGLQSKNVQACIKHFVCN 151
>SPAPYUG7.02c |sin1||stress activated MAP kinase interacting protein
Sin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 665
Score = 24.6 bits (51), Expect = 6.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +1
Query: 115 SALYRSVSLKQRASTFNRMSIQNLNTFDPF 204
+++Y S+ ++ST+N I + NT+ F
Sbjct: 533 NSVYGSIKKDAQSSTYNATDIMSSNTYQEF 562
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.2 bits (50), Expect = 8.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Frame = +3
Query: 171 VHPESEHIRPIRRCYQKL 224
+HP + +RRC+Q+L
Sbjct: 1969 IHPLKRKVAQVRRCFQEL 1986
>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 790
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/31 (32%), Positives = 19/31 (61%)
Frame = -2
Query: 231 VLRAFDSIGEWVECVQILDGHTIERRCSLFQ 139
+LR S+ W+ ++ +G T+E+R LF+
Sbjct: 25 LLRDPYSLKSWLRYIKTHEGSTLEKRVLLFE 55
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,488
Number of Sequences: 5004
Number of extensions: 36381
Number of successful extensions: 121
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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