Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K07
         (430 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical pr...   116   1e-26
AF016443-9|AAC24273.1|  364|Caenorhabditis elegans Hypothetical ...    31   0.27 
U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical pr...    28   0.44 
Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical pr...    29   1.4  
AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical ...    29   1.9  
AF038613-10|AAB92047.1|  148|Caenorhabditis elegans Hypothetical...    29   1.9  
AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical ...    28   3.3  
AF099925-9|AAC69500.1|  150|Caenorhabditis elegans Hypothetical ...    27   4.3  
Z81564-11|CAB04576.1|  436|Caenorhabditis elegans Hypothetical p...    27   5.7  
Z66495-11|CAK12849.1|  502|Caenorhabditis elegans Hypothetical p...    27   5.7  
U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical pr...    27   5.7  
U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily ass...    27   5.7  
U50072-4|AAA93451.1|  250|Caenorhabditis elegans Cytochrome p450...    27   5.7  
DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.      27   5.7  
AF067942-11|AAG45576.2|  406|Caenorhabditis elegans Downstream o...    27   5.7  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    26   10.0 

>U58762-4|AAK39303.1|  109|Caenorhabditis elegans Hypothetical
           protein T27F7.3b protein.
          Length = 109

 Score =  116 bits (278), Expect = 1e-26
 Identities = 57/89 (64%), Positives = 71/89 (79%), Gaps = 2/89 (2%)
 Frame = +1

Query: 169 MSIQNLNTFDPFADAIKS--SEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVR 342
           MSI NLN   P ADA +   +ED V+ G+ H+RIQQR GRKT+TTVQG+ +EYDLK+IV+
Sbjct: 1   MSIANLNR--P-ADAFEQLETEDGVRQGVCHIRIQQRTGRKTITTVQGIGTEYDLKRIVQ 57

Query: 343 ACKKEFACNGTVVEHPEYGEVLQLQGDQR 429
             KK+ +CNGT+VEHPEYGEV+QL GDQR
Sbjct: 58  YLKKKHSCNGTIVEHPEYGEVIQLTGDQR 86


>AF016443-9|AAC24273.1|  364|Caenorhabditis elegans Hypothetical
           protein C17E7.4 protein.
          Length = 364

 Score = 31.5 bits (68), Expect = 0.27
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 304 PAPWSMFYARSAAGFGRALDHLARRPPSF**HRRMGRMCSDS 179
           PAP S  Y      F R++D L   PPS+  +  +  +CS S
Sbjct: 258 PAPRSFAYPNPPLPFHRSMDFLNSGPPSYLYNENLSSLCSSS 299


>U40419-9|AAA81429.2| 1715|Caenorhabditis elegans Hypothetical protein
            C27F2.8 protein.
          Length = 1715

 Score = 28.3 bits (60), Expect(2) = 0.44
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = -1

Query: 409  AAPRRTPGAPQRYRCTRTPSCMPARSSSSHIPRTSPAP 296
            A P   P  P   +  RTPS  P++S+ +  P +SPAP
Sbjct: 1354 AIPVERPKQPTPSKA-RTPSKTPSQSNRAQHPASSPAP 1390



 Score = 21.0 bits (42), Expect(2) = 0.44
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 322  HIPRTSPAPWSMFYARSAAGFGRALD 245
            H+P TS     +FY +  +  G  +D
Sbjct: 1403 HVPPTSLTSPDLFYRQFLSSMGMPMD 1428


>Z79600-6|CAB01879.2|  529|Caenorhabditis elegans Hypothetical
           protein F59C6.8 protein.
          Length = 529

 Score = 29.1 bits (62), Expect = 1.4
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = +1

Query: 157 TFNRMSIQNLNTFDPF-ADAIKSSEDDVQDGL-VHVRIQQRNGRKTLTTV 300
           TFNR  I N   FDP+  +A K +   + DGL +  + + R  + T+ T+
Sbjct: 398 TFNRSKISNPPFFDPYHLNATKRAIYKISDGLKIQRKFKNRVSQGTMKTI 447


>AF067211-1|AAC16986.1|  455|Caenorhabditis elegans Hypothetical
           protein B0205.10 protein.
          Length = 455

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = -1

Query: 409 AAPRRTPGAPQRYRCTRTPSCMPARSSSSHIPRT-SPAP 296
           +AP  TP AP       TP   PA  + +  P T +PAP
Sbjct: 101 SAPEPTPDAPAAAPVQETPQVAPAPETPAPAPETPAPAP 139


>AF038613-10|AAB92047.1|  148|Caenorhabditis elegans Hypothetical
           protein F42A6.2 protein.
          Length = 148

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 18/57 (31%), Positives = 24/57 (42%)
 Frame = -1

Query: 421 RLAVAAPRRTPGAPQRYRCTRTPSCMPARSSSSHIPRTSPAPWSMFYARSAAGFGRA 251
           R  +AAP  TP AP+       P+  PA S SS     S A     +      FG++
Sbjct: 77  RSTLAAPTPTPAAPELRSTLSAPTPTPAPSGSSGFSFGSIAKLMEEFMEKVFNFGKS 133


>AC024859-3|AAK29969.2|  871|Caenorhabditis elegans Hypothetical
           protein Y71H2AM.10 protein.
          Length = 871

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 18/52 (34%), Positives = 24/52 (46%)
 Frame = +2

Query: 2   HEARILQCPPLHFGVRVNWSPVSGNTPPRVISDSYIVEVRCIAAFH*NKEHL 157
           HE +   C  +   V  +W PV  N    V+S SY V  +C   FH   +HL
Sbjct: 81  HEDQKSSCV-IRIPVPFSWFPVDQNRTS-VLSVSYTVSEKCDQNFHDLPQHL 130


>AF099925-9|AAC69500.1|  150|Caenorhabditis elegans Hypothetical
           protein K01A2.9 protein.
          Length = 150

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 395 YSGCSTTVPLHANSFLHARTIFFK 324
           YS C+TTV +  +  LH+ ++F+K
Sbjct: 126 YSSCATTVSVGIHLVLHSMSVFWK 149


>Z81564-11|CAB04576.1|  436|Caenorhabditis elegans Hypothetical
           protein K05C4.11 protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 265 QQRNGRKTL-TTVQGLSSEYDLKKIVRACKKEFACNG 372
           ++R G K + T V+GL  E D      +CK +F C+G
Sbjct: 290 EERIGFKVVWTAVEGLIGEGDESVNGNSCKDQFMCHG 326


>Z66495-11|CAK12849.1|  502|Caenorhabditis elegans Hypothetical
           protein C36A4.3 protein.
          Length = 502

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 53  NWSPVSGNTPPRVISDSYIVEVRCIAAFH*NKEHLRSIVCP 175
           N+S  S  TPP +I D+ + E      +    +H RS + P
Sbjct: 103 NFSNFSDRTPPPIIEDNKLKESLLQNTYESGWKHTRSAIAP 143


>U97006-1|AAC47965.1| 2076|Caenorhabditis elegans Hypothetical
           protein C13F10.4 protein.
          Length = 2076

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -2

Query: 192 CVQILDGHTIERRCSLFQ*NAAIQRTS 112
           C++IL+G T E RC++ +  A +  TS
Sbjct: 228 CIKILEGSTYELRCAVAKFTAQLLATS 254


>U80447-4|AAB37808.1|  560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 326 protein.
          Length = 560

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -1

Query: 412 VAAPRRTPG-APQRYRCTRTPSCMP--ARSSSSHI-PRTSPAP 296
           VA+PRR    +P+R R  R+PS  P   R S+S I  R SP+P
Sbjct: 486 VASPRRRRSPSPERQRKRRSPSDSPPTRRLSTSPIRRRRSPSP 528


>U50072-4|AAA93451.1|  250|Caenorhabditis elegans Cytochrome p450
           family protein 25A6 protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +2

Query: 53  NWSPVSGNTPPRVISDSYIVEVRCIAAFH*NKEHLRSIVCP 175
           N+S  S  TPP +I D+ + E      +    +H RS + P
Sbjct: 103 NFSNFSDRTPPPIIEDNKLKESLLQNTYESGWKHTRSAIAP 143


>DQ645890-1|ABG34266.1|  560|Caenorhabditis elegans CIR-1 protein.
          Length = 560

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 4/43 (9%)
 Frame = -1

Query: 412 VAAPRRTPG-APQRYRCTRTPSCMP--ARSSSSHI-PRTSPAP 296
           VA+PRR    +P+R R  R+PS  P   R S+S I  R SP+P
Sbjct: 486 VASPRRRRSPSPERQRKRRSPSDSPPTRRLSTSPIRRRRSPSP 528


>AF067942-11|AAG45576.2|  406|Caenorhabditis elegans Downstream of
           daf-16 (regulatedby daf-16) protein 19 protein.
          Length = 406

 Score = 27.1 bits (57), Expect = 5.7
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
 Frame = +1

Query: 103 LYC*SALYRSVSLKQRAS--TFNRMSIQN-LNTFDPFADAIKSSEDDVQDGLVHVRIQQR 273
           L+  SAL+   S +Q  S   F  MS+ N LN   P+   + +  DD  + L  + +   
Sbjct: 7   LFTVSALFMCGSAQQLMSLKNFEGMSVHNDLNVDAPYNFYVSADSDDA-NVLQQISVVTE 65

Query: 274 NGRKTL 291
           +G+KTL
Sbjct: 66  SGQKTL 71


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 26.2 bits (55), Expect = 10.0
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 415 AVAAPRRTPGAPQRYRCTRTPSCMP 341
           A  AP+ T   P   R   TP+CMP
Sbjct: 307 AATAPQSTNPTPVEVRALCTPTCMP 331


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,719,546
Number of Sequences: 27780
Number of extensions: 225524
Number of successful extensions: 857
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 791
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)