Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K07
(430 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g54290.1 68414.m06189 eukaryotic translation initiation facto... 105 2e-23
At4g27130.1 68417.m03899 eukaryotic translation initiation facto... 103 7e-23
At5g54760.1 68418.m06820 eukaryotic translation initiation facto... 102 9e-23
At5g54940.2 68418.m06843 eukaryotic translation initiation facto... 99 1e-21
At5g54940.1 68418.m06842 eukaryotic translation initiation facto... 99 1e-21
At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transfera... 35 0.027
At5g11900.1 68418.m01392 eukaryotic translation initiation facto... 31 0.25
At2g15345.1 68415.m01755 expressed protein 30 0.77
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 28 2.3
At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein ... 28 2.3
At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein ... 28 3.1
At1g63470.1 68414.m07177 DNA-binding family protein contains a A... 28 3.1
At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing ... 27 4.1
At1g24120.1 68414.m03043 DNAJ heat shock protein, putative simil... 27 4.1
At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3, p... 27 5.4
At1g63430.1 68414.m07173 leucine-rich repeat transmembrane prote... 27 5.4
At1g56000.1 68414.m06425 amine oxidase-related contains Pfam pro... 27 5.4
At3g04550.1 68416.m00483 expressed protein 27 7.1
At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containi... 27 7.1
At4g31490.1 68417.m04473 coatomer beta subunit, putative / beta-... 26 9.4
At2g24690.1 68415.m02948 transcriptional factor B3 family protei... 26 9.4
At1g55980.1 68414.m06421 expressed protein 26 9.4
>At1g54290.1 68414.m06189 eukaryotic translation initiation factor
SUI1, putative similar to P|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 105 bits (251), Expect = 2e-23
Identities = 49/87 (56%), Positives = 59/87 (67%)
Frame = +1
Query: 169 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 348
+ +Q FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++
Sbjct: 4 LEVQVPTAFDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYSKILKDL 63
Query: 349 KKEFACNGTVVEHPEYGEVLQLQGDQR 429
KKEF CNGTVV+ E G+V+QLQGDQR
Sbjct: 64 KKEFCCNGTVVQDSELGQVIQLQGDQR 90
>At4g27130.1 68417.m03899 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 103 bits (246), Expect = 7e-23
Identities = 48/79 (60%), Positives = 56/79 (70%)
Frame = +1
Query: 193 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 372
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANAEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 373 TVVEHPEYGEVLQLQGDQR 429
TVV+ E G+V+QLQGDQR
Sbjct: 72 TVVQDSELGQVIQLQGDQR 90
>At5g54760.1 68418.m06820 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 113
Score = 102 bits (245), Expect = 9e-23
Identities = 48/79 (60%), Positives = 56/79 (70%)
Frame = +1
Query: 193 FDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNG 372
FDPFADA VH+R+QQRNGRK+LTTVQGL EY KI++ KKEF CNG
Sbjct: 12 FDPFADANVEDSGAGTKEYVHIRVQQRNGRKSLTTVQGLKKEYSYTKILKDLKKEFCCNG 71
Query: 373 TVVEHPEYGEVLQLQGDQR 429
TVV+ E G+V+QLQGDQR
Sbjct: 72 TVVQDSELGQVIQLQGDQR 90
>At5g54940.2 68418.m06843 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 98.7 bits (235), Expect = 1e-21
Identities = 44/87 (50%), Positives = 63/87 (72%)
Frame = +1
Query: 169 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 348
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 349 KKEFACNGTVVEHPEYGEVLQLQGDQR 429
KK+F CNG VV+ E G+++QLQGDQR
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQGDQR 89
>At5g54940.1 68418.m06842 eukaryotic translation initiation factor
SUI1, putative similar to SP|P32911 Protein translation
factor SUI1 {Saccharomyces cerevisiae}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 112
Score = 98.7 bits (235), Expect = 1e-21
Identities = 44/87 (50%), Positives = 63/87 (72%)
Frame = +1
Query: 169 MSIQNLNTFDPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRAC 348
+ IQ + +DPFA+A S ++ +H+RIQQRNG+K+LTTVQGL EY ++I++
Sbjct: 4 LDIQIPSAYDPFAEAKDSDAPGAKEN-IHIRIQQRNGKKSLTTVQGLKKEYSYERILKDL 62
Query: 349 KKEFACNGTVVEHPEYGEVLQLQGDQR 429
KK+F CNG VV+ E G+++QLQGDQR
Sbjct: 63 KKDFCCNGNVVQDKELGKIIQLQGDQR 89
>At1g05530.1 68414.m00567 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 455
Score = 34.7 bits (76), Expect = 0.027
Identities = 23/57 (40%), Positives = 35/57 (61%), Gaps = 3/57 (5%)
Frame = +1
Query: 133 VSLKQRASTFNRMSIQNLN--TF-DPFADAIKSSEDDVQDGLVHVRIQQRNGRKTLT 294
+S+ R+ N +++NL+ TF D F D + S+ DDVQ+ LVH +RNG K L+
Sbjct: 41 LSVIHRSMIPNHNNVENLSFLTFSDGFDDGVISNTDDVQNRLVHF---ERNGDKALS 94
>At5g11900.1 68418.m01392 eukaryotic translation initiation factor
SUI1 family protein similar to SP|O43583
Density-regulated protein (DRP1 protein) (Smooth muscle
cell associated protein-3) {Homo sapiens}; contains Pfam
profile PF01253: Translation initiation factor SUI1
Length = 198
Score = 31.5 bits (68), Expect = 0.25
Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
Frame = +1
Query: 271 RNGRKTLTTVQGLSS-EYDLKKIVRACKKEFACNGTVVEHPEYGEVLQLQGD 423
RN RK +T V+GL L + K+FA +VV+ P E + +QGD
Sbjct: 114 RNKRKCITIVKGLELFGIKLSDASKKLGKKFATGASVVKGPTEKEQIDVQGD 165
>At2g15345.1 68415.m01755 expressed protein
Length = 121
Score = 29.9 bits (64), Expect = 0.77
Identities = 20/52 (38%), Positives = 29/52 (55%), Gaps = 5/52 (9%)
Frame = +1
Query: 244 GLVHVRIQQ--RNGRKTLTTVQGL--SSEYD-LKKIVRACKKEFACNGTVVE 384
GLV++ QQ R G K L ++GL + Y LKK R+C KE+ + +E
Sbjct: 3 GLVNMVYQQTERLGYKNLEMIKGLDRTENYSKLKKYYRSCVKEYELSNKAIE 54
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 28.3 bits (60), Expect = 2.3
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +3
Query: 150 SIYVQSYVHPESEHIRPIRRCYQ 218
+IYV+S V P +H+RPIR YQ
Sbjct: 191 NIYVRSDVKPIKDHVRPIRE-YQ 212
>At3g62240.1 68416.m06992 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 812
Score = 28.3 bits (60), Expect = 2.3
Identities = 16/45 (35%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Frame = +2
Query: 299 CRACPRNM--T*RRSCGHARRSSRATVPLWSTRSTARCCNCKATS 427
C C N+ SCGH S V L RCC CK S
Sbjct: 5 CAVCADNLEWVAYGSCGHREVCSTCVVRLRFVLDDPRCCICKTES 49
>At2g47090.1 68415.m05882 zinc finger (C2H2 type) family protein
contains Prosite PS00028: Zinc finger, C2H2 type, domain
Length = 745
Score = 27.9 bits (59), Expect = 3.1
Identities = 15/42 (35%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Frame = +2
Query: 299 CRACPRNM--T*RRSCGHARRSSRATVPLWSTRSTARCCNCK 418
C C N+ SCGH S V L + RCC CK
Sbjct: 5 CAVCAENLEWVGYGSCGHREVCSTCVVRLRFILNDRRCCICK 46
>At1g63470.1 68414.m07177 DNA-binding family protein contains a AT
hook motif (DNA binding motifs with a preference for A/T
rich regions), Pfam:PF02178
Length = 378
Score = 27.9 bits (59), Expect = 3.1
Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -1
Query: 382 PQRYRCTRTPSCMP--ARSSSSHIPRTSPAPWSMFYARSAAGFGRALDHLARRP 227
P TP P A S+ H P+ PA + S +G GR+LD +R P
Sbjct: 317 PTNSEMETTPGSAPEAAASTGQHTPQNFPAQGMSGWPVSGSGSGRSLDS-SRNP 369
>At2g22100.1 68415.m02625 RNA recognition motif (RRM)-containing
protein similar to UBP1 interacting protein 1a
[Arabidopsis thaliana] GI:19574236; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 382
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 382 PQRYRCTRTPSCMPARSSSSHIPRTSPAP 296
P++ RT SC+PAR +S PR P
Sbjct: 224 PEKRMYNRTVSCLPARPFNSGKPREQQQP 252
>At1g24120.1 68414.m03043 DNAJ heat shock protein, putative similar
to Altered Response to Gravity [Arabidopsis thaliana]
GI:4249662; contains Pfam profile PF00226 DnaJ domain
Length = 436
Score = 27.5 bits (58), Expect = 4.1
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +2
Query: 101 SYIVEVRCIAAFH*NKEHLRSI 166
SY ++V C AAF KE LRS+
Sbjct: 279 SYTIQVLCAAAFTQEKEDLRSV 300
>At1g75990.1 68414.m08824 26S proteasome regulatory subunit S3,
putative (RPN3) similar to 26S proteasome regulatory
subunit S3 SP:P93768 [Nicotiana tabacum (Common
tobacco)]
Length = 487
Score = 27.1 bits (57), Expect = 5.4
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 6/53 (11%)
Frame = +1
Query: 139 LKQRASTFNRMSIQN------LNTFDPFADAIKSSEDDVQDGLVHVRIQQRNG 279
L+ + +++R+S+Q+ LN+ +P ADA ++DG + I +NG
Sbjct: 359 LRNISISYSRISLQDVAQKLRLNSANPVADAESIVAKAIRDGAIDATIDHKNG 411
>At1g63430.1 68414.m07173 leucine-rich repeat transmembrane protein
kinase, putative contains Pfam profiles: PF00069
Eukaryotic protein kinase domain, PF00560 Leucine Rich
Repeat; contains 1 predicted transmembrane domain
Length = 664
Score = 27.1 bits (57), Expect = 5.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 322 DLKKIVRACKKEFACNGTVVEHPEYGE 402
++ R E+A NGT+ EH YGE
Sbjct: 429 EISPFTRMLVFEYASNGTLYEHLHYGE 455
>At1g56000.1 68414.m06425 amine oxidase-related contains Pfam
profile PF01593: amine oxidase, flavin-containing
Length = 384
Score = 27.1 bits (57), Expect = 5.4
Identities = 19/53 (35%), Positives = 24/53 (45%)
Frame = +1
Query: 232 DVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHP 390
D + ++H N T +Q LSSE L KI KEF C+G V P
Sbjct: 269 DSERWILHSTPDYANSVIAKTGLQKLSSE-TLNKISEEMFKEFQCSGLVSSLP 320
>At3g04550.1 68416.m00483 expressed protein
Length = 449
Score = 26.6 bits (56), Expect = 7.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -1
Query: 382 PQRYRCTRTPSCMPARSSSSHIPRTSPAPWSMF 284
P+ T T S +P RSS++ IP+ PA ++
Sbjct: 33 PRTVSFTVTASMIPKRSSANMIPKNPPARQQLY 65
>At1g61870.1 68414.m06981 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 408
Score = 26.6 bits (56), Expect = 7.1
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 72 ETHRRALSVTVILLKCVVSQRFIETKSIYVQSYVHPESEHIRPIRRCYQKL 224
E R S+ +L C+V++ + E K +Y++ P+ I P Y ++
Sbjct: 146 EISRTVKSLNALLFACLVAKDYKEAKRVYIEM---PKMYGIEPDLETYNRM 193
>At4g31490.1 68417.m04473 coatomer beta subunit, putative /
beta-coat protein, putative / beta-COP, putative similar
to Coatomer beta subunit (Beta-coat protein) (Beta-COP)
from {Rattus norvegicus} SP|P23514, {Mus musculus}
SP|Q9JIF7, {Homo sapiens} SP|P53618; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 948
Score = 26.2 bits (55), Expect = 9.4
Identities = 34/132 (25%), Positives = 57/132 (43%), Gaps = 2/132 (1%)
Frame = +1
Query: 19 TVSAITFWCPRKLVTCQRKHTAARYQ*QLYC*SALYRSVSLKQRASTFNRMSIQNLNTFD 198
T SA+ + C LV+ TA R YC L +S + + +R+ L T
Sbjct: 254 TSSAVIYECAGTLVSLSSAPTAIRAAANTYCQLLLSQSDN-NVKLILLDRL--YELKTLH 310
Query: 199 PFADAIKSSEDDVQDGLVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEF--ACNG 372
D + DV L + R RKTL L + +++ ++V+ KKE +G
Sbjct: 311 --RDIMVELIIDVLRALSSPNLDIR--RKTLDIALDLITHHNINEVVQMLKKEVVKTQSG 366
Query: 373 TVVEHPEYGEVL 408
+ ++ EY ++L
Sbjct: 367 ELEKNGEYRQML 378
>At2g24690.1 68415.m02948 transcriptional factor B3 family protein
low similarity to reproductive meristem protein 1
[Arabidopsis thaliana] GI:13604227; contains Pfam
profile PF02362: B3 DNA binding domain
Length = 682
Score = 26.2 bits (55), Expect = 9.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = -3
Query: 416 CSCSTSPYSGCSTTVPLHANSFLHAR 339
C STSP C+ TV + +S H R
Sbjct: 175 CKDSTSPSQNCTLTVTITPDSLEHGR 200
>At1g55980.1 68414.m06421 expressed protein
Length = 464
Score = 26.2 bits (55), Expect = 9.4
Identities = 18/48 (37%), Positives = 22/48 (45%)
Frame = +1
Query: 247 LVHVRIQQRNGRKTLTTVQGLSSEYDLKKIVRACKKEFACNGTVVEHP 390
++H N T +Q LSSE L KI KEF C+G V P
Sbjct: 410 ILHSTPDYANSVIAKTGLQKLSSE-TLNKISEEMFKEFQCSGLVSSLP 456
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,057,129
Number of Sequences: 28952
Number of extensions: 207696
Number of successful extensions: 636
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 619
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 675111616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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