Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K06
         (280 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    25   1.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   2.0  
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    23   8.0  

>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 25.4 bits (53), Expect = 1.5
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 11  QSPFTQEECEEVNRLCRL 64
           Q   TQEE E ++RLC+L
Sbjct: 315 QIQITQEESESIDRLCQL 332


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 1   ARGAKPLHPRRMRRSEPPVSPRDRRADGKLSPCCSAS 111
           A G+ PL P+  R + PP  PR   + G+  P  S+S
Sbjct: 347 AAGSIPLPPQG-RSAPPPPPPRSAPSTGRQPPPLSSS 382


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -3

Query: 98  HGLSLPSALLSRGD 57
           H ++LP+ALLSR D
Sbjct: 525 HNINLPAALLSRFD 538


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,611
Number of Sequences: 5004
Number of extensions: 9456
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 2,362,478
effective HSP length: 62
effective length of database: 2,052,230
effective search space used: 61566900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)