Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K06
         (280 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_02_0156 + 7163756-7163834,7165447-7166225                           27   2.8  
02_02_0327 - 8983983-8985878                                           27   2.8  
07_03_0444 - 18279368-18279890,18279995-18280326                       26   3.7  
06_03_1267 - 28851286-28851306,28851452-28851520,28852031-288520...    26   4.9  
04_03_0314 - 14238620-14240128                                         26   4.9  
11_02_0012 - 7346282-7347136,7347234-7347593                           25   6.5  
10_02_0144 + 5815403-5815520,5815551-5816314                           25   6.5  
04_03_0655 + 18436363-18436901,18436984-18437772,18437952-184380...    25   6.5  
04_01_0156 - 1780395-1780686,1780773-1781248,1781263-1781678,178...    25   8.6  
02_05_1202 + 34932291-34933027,34933297-34933774                       25   8.6  

>05_02_0156 + 7163756-7163834,7165447-7166225
          Length = 285

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/23 (52%), Positives = 12/23 (52%)
 Frame = +1

Query: 16  PLHPRRMRRSEPPVSPRDRRADG 84
           PLHPR  RR   P  PR  R  G
Sbjct: 94  PLHPRHRRRRAAPPRPRRLRPVG 116


>02_02_0327 - 8983983-8985878
          Length = 631

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 176 NANLD*ITTLSSYN*PRG-KSRYDALQHGLSLPSA 75
           ++ +D +   SSYN PRG K ++D L  GL   S+
Sbjct: 35  SSQIDVLAHCSSYNLPRGTKRKFDGLSLGLGNSSS 69


>07_03_0444 - 18279368-18279890,18279995-18280326
          Length = 284

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +1

Query: 19 LHPRRMRRSEPPVSPR 66
          LHPRR RR    VSPR
Sbjct: 15 LHPRRRRRGNVAVSPR 30


>06_03_1267 -
          28851286-28851306,28851452-28851520,28852031-28852066,
          28852381-28852486,28852869-28852997,28853685-28853797,
          28853907-28853993,28854106-28854543
          Length = 332

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 7  GAKPLHPRRMRRSEPPVSPRDRRA 78
          G+KP  PRR     PP +P D  A
Sbjct: 6  GSKPYQPRRGPERPPPPAPADDAA 29


>04_03_0314 - 14238620-14240128
          Length = 502

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 13 KPLHPRRMRRSEPPVS 60
          +P+HPRR+R   PP S
Sbjct: 17 QPIHPRRVRLPNPPPS 32


>11_02_0012 - 7346282-7347136,7347234-7347593
          Length = 404

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -1

Query: 145 VVTTSREGR--AATTRCSMD*ACRRLFCREATQAVHFFAFFLGE 20
           VV  + EG   AA T C+M   C  L       A H FAFF+ E
Sbjct: 342 VVEVNEEGTEAAAATACTMKFLCLTLTSPVDFVADHPFAFFVVE 385


>10_02_0144 + 5815403-5815520,5815551-5816314
          Length = 293

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +1

Query: 4   RGAKPLHPRRMRRSEPPVSP-RDRRADGK 87
           RG + L P R+RRS P + P R +R  GK
Sbjct: 85  RGGRVLAPHRLRRS-PALGPKRQKRRRGK 112


>04_03_0655 +
          18436363-18436901,18436984-18437772,18437952-18438028,
          18438034-18438248
          Length = 539

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +1

Query: 19 LHPRRMRRSEPPVSPRDRRADGKLS 93
          + PRR RRS PP +      D +LS
Sbjct: 3  VRPRRRRRSAPPRAASHSEGDDRLS 27


>04_01_0156 -
           1780395-1780686,1780773-1781248,1781263-1781678,
           1781904-1782111
          Length = 463

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = +1

Query: 25  PRRMRRSEPPVSPRDRRADGKLSPCCSAS 111
           PR+   S PP S  D R  G  S   +AS
Sbjct: 248 PRKRLSSLPPASDADARTGGSASATAAAS 276


>02_05_1202 + 34932291-34933027,34933297-34933774
          Length = 404

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 31  RMRRSEPPVSPRDRRADGKLSPCCSA 108
           ++RR  PP+  R RR   +LSP  ++
Sbjct: 15  QLRRPPPPLPHRPRRLRSRLSPIAAS 40


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,720,243
Number of Sequences: 37544
Number of extensions: 74086
Number of successful extensions: 251
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 267635896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)