Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K06
         (280 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)                     27   3.1  
SB_18526| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     26   4.1  
SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.)               26   5.4  
SB_59315| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  
SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   7.1  

>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
          Length = 1481

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +2

Query: 17   PFTQEECEEVNRLCRLATEE 76
            P TQEE EE++  C    EE
Sbjct: 1395 PITQEEAEEISEFCTRCDEE 1414


>SB_18526| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 322

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = +2

Query: 2   HEGQSPFTQEECEEVNRLCRLATEEPTASSVH 97
           H GQ P+   +C+E  + C L T   T   +H
Sbjct: 72  HSGQKPY---KCDECGKCCTLHTHLKTHQRIH 100


>SB_2463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 941

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 16  PLHPRRMRRSEPPVSPRDRRADGKLSP 96
           P+  RR  R++PP SPR R    K  P
Sbjct: 854 PVGSRRDTRTQPPQSPRPREDPPKDDP 880


>SB_59315| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 296

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = +1

Query: 1   ARGAKPLHPRRMRRSEPPVSPRDRRADGKLSPCCSAS*R-LFPR 129
           +R  + L PR  R ++  + PRD R D  L PC S + R L PR
Sbjct: 156 SRTDRDLVPRDSR-TDWDLVPRDSRTDWDLVPCDSRTDRDLVPR 198


>SB_56158| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +1

Query: 25  PRRMRRSEPPVSPRDRRADGKLSP 96
           PR +RR  PP SP  R    K+ P
Sbjct: 164 PRNLRRKPPPRSPLKRPPRSKVLP 187


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,500,782
Number of Sequences: 59808
Number of extensions: 78367
Number of successful extensions: 286
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 16,821,457
effective HSP length: 69
effective length of database: 12,694,705
effective search space used: 291978215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)