Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K06
         (280 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U10438-4|AAA19085.2|  344|Caenorhabditis elegans Hypothetical pr...    27   2.0  
U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain, un...    27   2.6  
U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain, un...    27   2.6  
U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.        27   2.6  
AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical ...    25   6.1  

>U10438-4|AAA19085.2|  344|Caenorhabditis elegans Hypothetical
           protein B0280.7 protein.
          Length = 344

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 19  LHPRRMRRSEPPVSPRDRRADGKLSPC 99
           ++P   +  EP V+P D   DG+L  C
Sbjct: 151 IYPEEEKWVEPQVNPNDTSIDGRLMQC 177


>U53181-2|AAR04675.1| 1837|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform a protein.
          Length = 1837

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 5   EGQSPFTQEECEEVNRLCR 61
           EG S  +   C+E++RLCR
Sbjct: 390 EGSSAVSASSCQEISRLCR 408


>U53181-1|AAR04676.1| 1839|Caenorhabditis elegans Heavy chain,
           unconventional myosinprotein 2, isoform b protein.
          Length = 1839

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 5   EGQSPFTQEECEEVNRLCR 61
           EG S  +   C+E++RLCR
Sbjct: 390 EGSSAVSASSCQEISRLCR 408


>U52516-1|AAA97926.1| 1839|Caenorhabditis elegans hum-2 protein.
          Length = 1839

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +2

Query: 5   EGQSPFTQEECEEVNRLCR 61
           EG S  +   C+E++RLCR
Sbjct: 390 EGSSAVSASSCQEISRLCR 408


>AC024753-1|AAF60456.1|  732|Caenorhabditis elegans Hypothetical
           protein Y23H5B.6 protein.
          Length = 732

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 20  FTQEECEEVNRLCRLATEEPTASSVH 97
           F+  +   V  LCR+ T +P   SVH
Sbjct: 259 FSATQTRNVKDLCRVCTNDPVFVSVH 284


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,584,535
Number of Sequences: 27780
Number of extensions: 56186
Number of successful extensions: 129
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 248937694
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)