Samia BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K06
         (280 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g20310.1 68416.m02573 ethylene-responsive element-binding fam...    26   3.2  
At3g56690.1 68416.m06306 calmodulin-binding protein identical to...    25   9.9  
At1g51800.1 68414.m05837 leucine-rich repeat protein kinase, put...    25   9.9  

>At3g20310.1 68416.m02573 ethylene-responsive element-binding family
           protein similar to SP|O80339 Ethylene responsive element
           binding factor 3 (AtERF3) {Arabidopsis thaliana};
           contains Pfam profile PF00847: AP2 domain
          Length = 244

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +1

Query: 10  AKPLHPRRMRRSEPPVSPRDRRAD 81
           AKPLH  +     PPV+P D  +D
Sbjct: 167 AKPLHAIKRYPRTPPVAPEDCHSD 190


>At3g56690.1 68416.m06306 calmodulin-binding protein identical to
          calmodulin-binding protein GI:6760428 from [Arabidopsis
          thaliana]
          Length = 1022

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +1

Query: 25 PRRMRRSEPPVSPR 66
          P R+  SEPP SPR
Sbjct: 11 PSRLSNSEPPASPR 24


>At1g51800.1 68414.m05837 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 894

 Score = 24.6 bits (51), Expect = 9.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 7   GAKPLHPRRMRRSEPPVSPRDRR 75
           G  PLH R     EPPV  ++R+
Sbjct: 553 GTTPLHSRSHHGFEPPVIAKNRK 575


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,384,512
Number of Sequences: 28952
Number of extensions: 52948
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 231676056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)