Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K05
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   178   4e-46
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   178   4e-46
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   1.5  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   3.4  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   4.5  
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma...    25   7.8  
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     25   7.8  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   7.8  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  178 bits (433), Expect = 4e-46
 Identities = 84/148 (56%), Positives = 102/148 (68%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
           MGAY+Y++EL +KK SDV  FL R+R W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 396
           I+RI               TYGKP   GVN LK  R+ +  AEE            NSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 397 VAQDSSYKYFEVILIDPSHKAIRRDPKI 480
           V QD++YK+FEVIL+DPSHKAIRRDP+I
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRI 148


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  178 bits (433), Expect = 4e-46
 Identities = 84/148 (56%), Positives = 102/148 (68%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
           MGAY+Y++EL +KK SDV  FL R+R W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 396
           I+RI               TYGKP   GVN LK  R+ +  AEE            NSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 397 VAQDSSYKYFEVILIDPSHKAIRRDPKI 480
           V QD++YK+FEVIL+DPSHKAIRRDP+I
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRI 148


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 123 LPHSYTQEKSHNIAQLFPIQLLYISVRAH 37
           LPHS   EKS N+ Q   +QL  ++++ H
Sbjct: 761 LPHSCEMEKSLNVLQHKVLQLQAVNMKLH 789


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 141 TSQLAILPHSYTQEKSHNIAQLFPIQLL 58
           +SQL  L H+Y +EKS N   L  IQ L
Sbjct: 433 SSQLEHLKHNYEEEKSMNENLLVRIQTL 460


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +2

Query: 320 LATCSLLLRSVLVAGVVVYACLIHTG 397
           L T + +   V +AG+ +Y C+++TG
Sbjct: 730 LITAAAMDCGVAIAGLFIYFCVVYTG 755


>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 899

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 2   HEAEGSITDSSRWARTD 52
           + AE  +TD SRW R D
Sbjct: 401 YTAETELTDKSRWTRLD 417


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +1

Query: 103 LRIRVWQYRQLTRMHRAPRPTRPD 174
           L+  +W Y  L R++  PR   PD
Sbjct: 280 LKETMWDYLNLVRVYTRPRGLEPD 303


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +2

Query: 182 EGLDTVPSKVMLSSESACAVVAVNAQCP 265
           E L+ +P KV++     CAV  V    P
Sbjct: 841 EKLEDIPGKVVVFERKICAVYPVEGSSP 868


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,938,091
Number of Sequences: 5004
Number of extensions: 35983
Number of successful extensions: 92
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 90
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)