Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K05
         (480 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             196   8e-51
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)              30   1.1  
SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)                    29   2.0  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            29   2.0  
SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65)                     28   3.5  
SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.6  
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)           27   8.0  
SB_30971| Best HMM Match : Y_Y_Y (HMM E-Value=0.28)                    27   8.0  
SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  
SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.0  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  196 bits (478), Expect = 8e-51
 Identities = 90/148 (60%), Positives = 110/148 (74%)
 Frame = +1

Query: 37  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
           MGAY+Y++ELY+KK SD++RFLLR+R WQYRQLT +HRA RPTRPDKARRLGY+AKQG+V
Sbjct: 1   MGAYKYLEELYKKKQSDLLRFLLRVRCWQYRQLTAIHRATRPTRPDKARRLGYKAKQGFV 60

Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 396
           I+R+              ATYGKP + GVN+LK  R+L+S+AEE            NSYW
Sbjct: 61  IYRVRVRRGGRKRPVPKGATYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYW 120

Query: 397 VAQDSSYKYFEVILIDPSHKAIRRDPKI 480
           V QDS YKYFEVI++DP HKAIRRD +I
Sbjct: 121 VGQDSIYKYFEVIMVDPFHKAIRRDARI 148


>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
          Length = 180

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
 Frame = +3

Query: 132 VDSYAPRSQAHEARQGEKAWI---PCQARLCYLQNPRAPWW-P*TPSAQGSYLRQTQEPW 299
           V  Y  ++  ++A + +  W      QA  C+    ++ W+ P        Y   TQ   
Sbjct: 17  VPPYKTKANLNQASKTQANWCHPYKTQANWCHTSKIQSNWYHPNKTQTNWCYPTNTQANL 76

Query: 300 CQPTETHS 323
           C PT+TH+
Sbjct: 77  CHPTKTHA 84


>SB_3451| Best HMM Match : HOK_GEF (HMM E-Value=9.4)
          Length = 173

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 94  RFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQ 207
           +F ++     YR+ T+MH     +RP  + R G+R KQ
Sbjct: 16  KFFVKRLTTPYRRRTQMHLLVSTSRPASSWRRGFRGKQ 53


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
 Frame = +3

Query: 141 YAPRSQAHEARQGEKAWI---PCQARLCYLQNPRAPWW-P*TPSAQGSYLRQTQEPWCQP 308
           Y  ++  ++A + +  W      QA  C+    ++ W+ P        Y   TQ   C P
Sbjct: 175 YKTKANLNQASKTQANWCHPYKTQANWCHTSKIQSNWYHPNKTQTNWCYPTNTQANLCHP 234

Query: 309 TETHS 323
           T+TH+
Sbjct: 235 TKTHA 239


>SB_13929| Best HMM Match : VKOR (HMM E-Value=0.65)
          Length = 498

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +3

Query: 270 SYLRQTQEPWCQPTETHSQPAVYC*GACWSPVWWS 374
           S+LR T    CQP+++   P  +  G C S  WWS
Sbjct: 343 SFLRGTSFNICQPSQSMLNPIKHEGGLC-STQWWS 376


>SB_57888| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 565

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
 Frame = +3

Query: 201 QARLCYLQNPRAPWW-P*TPSAQGSYLRQTQEPWCQPTETHS 323
           QA   +     A W  P T  A   Y  +TQ  WC PT+T +
Sbjct: 293 QANCGHPTKTHANWCHPTTTHANWCYPTKTQANWCHPTKTQA 334


>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1853

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/14 (71%), Positives = 12/14 (85%)
 Frame = +2

Query: 152  LPGPRGQTRREGLD 193
            LPGPRG+T  +GLD
Sbjct: 1038 LPGPRGETGEKGLD 1051


>SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)
          Length = 1879

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 9/28 (32%), Positives = 18/28 (64%)
 Frame = -3

Query: 211  NLAWHGIQAFSPCLASWAWERGAYESTG 128
            ++AW     FS C  +W+++RG++  +G
Sbjct: 1258 SIAWVWPAVFSSCSPTWSYDRGSFCLSG 1285


>SB_30971| Best HMM Match : Y_Y_Y (HMM E-Value=0.28)
          Length = 290

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 281 ANPRAMVSTN*NPLATCSLLLRSVLVAGVVV 373
           +N +  V TN NP+A C+L L  +LV   VV
Sbjct: 78  SNYKLKVHTNGNPVANCNLPLSGMLVNDDVV 108


>SB_6818| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1784

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 10/37 (27%), Positives = 22/37 (59%)
 Frame = -1

Query: 204 LGTVSKPSRLVWPRGPGSAVHTSQLAILPHSYTQEKS 94
           + TV K   ++ P  P   +++++ A+LP SY+  ++
Sbjct: 350 IATVDKSREIMSPLSPPENLNSNKFALLPDSYSSSET 386


>SB_3043| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 777

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 25/76 (32%), Positives = 34/76 (44%), Gaps = 7/76 (9%)
 Frame = +2

Query: 164 RGQTRREG-LDTVPSKVMLSSESACAVVAVNAQCPRELPTANPRA------MVSTN*NPL 322
           R +TR    + T P +   +S S   V +V  QC R   TA  R       M  T  + L
Sbjct: 33  RARTRSPSPVATTPLETPSTSRSPAHVHSVALQCRRGPMTARSRGLSVTSWMFLTVSSTL 92

Query: 323 ATCSLLLRSVLVAGVV 370
           A CS ++ SV   G+V
Sbjct: 93  ALCSFVILSVTHPGIV 108


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,173,382
Number of Sequences: 59808
Number of extensions: 300449
Number of successful extensions: 797
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 733
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)