Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K05
(480 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B) 172 1e-43
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A) 172 1e-43
At2g47820.1 68415.m05968 expressed protein 31 0.53
At3g56410.2 68416.m06274 expressed protein 28 2.8
At3g56410.1 68416.m06273 expressed protein 28 2.8
At4g39520.1 68417.m05588 GTP-binding protein, putative similar t... 27 5.0
At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containi... 27 5.0
At1g59722.1 68414.m06722 hypothetical protein 27 5.0
At5g43570.1 68418.m05327 serine protease inhibitor, potato inhib... 27 6.5
At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive eff... 27 8.7
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ... 27 8.7
>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
Length = 204
Score = 172 bits (418), Expect = 1e-43
Identities = 77/148 (52%), Positives = 101/148 (68%)
Frame = +1
Query: 37 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
MGAY+Y+ EL+RKK SDVMRFL R+R W+YRQ + R RPTRPDKARRLGY+AKQG+V
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60
Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 396
++R+ YGKP + GV QLK R+ +S+AEE NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120
Query: 397 VAQDSSYKYFEVILIDPSHKAIRRDPKI 480
+ +DS+YKY+E+IL+DP+H A+R DP+I
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRI 148
>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
Length = 204
Score = 172 bits (418), Expect = 1e-43
Identities = 77/148 (52%), Positives = 101/148 (68%)
Frame = +1
Query: 37 MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 216
MGAY+Y+ EL+RKK SDVMRFL R+R W+YRQ + R RPTRPDKARRLGY+AKQG+V
Sbjct: 1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60
Query: 217 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 396
++R+ YGKP + GV QLK R+ +S+AEE NSYW
Sbjct: 61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120
Query: 397 VAQDSSYKYFEVILIDPSHKAIRRDPKI 480
+ +DS+YKY+E+IL+DP+H A+R DP+I
Sbjct: 121 LNEDSTYKYYEIILVDPAHNAVRNDPRI 148
>At2g47820.1 68415.m05968 expressed protein
Length = 805
Score = 30.7 bits (66), Expect = 0.53
Identities = 26/61 (42%), Positives = 34/61 (55%), Gaps = 9/61 (14%)
Frame = +2
Query: 182 EGLDTVPSKVMLSSESACA-----VVAVNAQC-PRELP-TAN--PRAMVSTN*NPLATCS 334
+G DTV + V+ +SES+CA V V QC P+EL TA+ P ST PL T +
Sbjct: 677 DGTDTVMADVVQNSESSCAEQSSVQVDVEKQCKPQELQVTADLLPERRQSTRTRPLTTKA 736
Query: 335 L 337
L
Sbjct: 737 L 737
>At3g56410.2 68416.m06274 expressed protein
Length = 1535
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 150 RSQAHEARQGEKAWIPCQARLCYLQNPRAPWWP*TPSAQGSY 275
RS + R W + R Y PR P++P +PS +Y
Sbjct: 193 RSSPYNTRSNAAQWAQHEGR--YADPPRVPFYPASPSPSSAY 232
>At3g56410.1 68416.m06273 expressed protein
Length = 1488
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 150 RSQAHEARQGEKAWIPCQARLCYLQNPRAPWWP*TPSAQGSY 275
RS + R W + R Y PR P++P +PS +Y
Sbjct: 146 RSSPYNTRSNAAQWAQHEGR--YADPPRVPFYPASPSPSSAY 185
>At4g39520.1 68417.m05588 GTP-binding protein, putative similar to
SP|Q9Y295 Developmentally regulated GTP-binding protein
1 (DRG 1) {Homo sapiens}; contains Pfam profiles
PF02824: TGS domain, PF01018: GTP1/OBG family
Length = 369
Score = 27.5 bits (58), Expect = 5.0
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = +1
Query: 112 RVWQYRQLTRMHRAPRPTRPD 174
++W+Y LTR++ P+ PD
Sbjct: 285 KIWEYLDLTRIYTKPKAMNPD 305
>At3g26540.1 68416.m03313 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile: PF01535 PPR repeat
Length = 700
Score = 27.5 bits (58), Expect = 5.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -3
Query: 163 WAWERGAYESTGDIATLLYAREIA*HRSTFSYTTPVYICTR 41
W +ER + S A ++ AR++ H TFS P+++ R
Sbjct: 62 WLYER-LFRSCSSKALVVQARKVQSHLVTFSPLPPIFLLNR 101
>At1g59722.1 68414.m06722 hypothetical protein
Length = 156
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = -1
Query: 327 VASGFQLVDTMALGFAVG 274
VA+GF L+D LGF+VG
Sbjct: 55 VAAGFSLMDPFTLGFSVG 72
>At5g43570.1 68418.m05327 serine protease inhibitor, potato
inhibitor I-type family protein similar to SP|P24076 Glu
S.griseus protease inhibitor (BGIA) {Momordica
charantia}; contains Pfam profile PF00280: Potato
inhibitor I family
Length = 91
Score = 27.1 bits (57), Expect = 6.5
Identities = 21/78 (26%), Positives = 36/78 (46%)
Frame = +2
Query: 152 LPGPRGQTRREGLDTVPSKVMLSSESACAVVAVNAQCPRELPTANPRAMVSTN*NPLATC 331
L G RG+ +E +D +KV S AVV C R N + +V+ P++
Sbjct: 8 LVGRRGEEVKEIIDRENTKVTAKIISENAVVLAVVICDRVYVRVNDQGIVTR--TPISLA 65
Query: 332 SLLLRSVLVAGVVVYACL 385
+L+ V+ + +Y C+
Sbjct: 66 NLI---VIYIYIYIYICV 80
>At4g15570.1 68417.m02379 tRNA-splicing endonuclease positive
effector-related contains similarity to SEN1, a positive
effector of tRNA-splicing endonuclease [Saccharomyces
cerevisiae] gi|172574|gb|AAB63976
Length = 818
Score = 26.6 bits (56), Expect = 8.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = +1
Query: 61 ELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRL 189
+L ++ S V RF I W Y+QLT+ + R R D +L
Sbjct: 7 KLQEEEASSVTRFYNIILGWDYKQLTKENE--RKNRKDSKEKL 47
>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
weak similarity to S-locus protein 4 (GI:6069478)
[Brassica rapa]; weak similarity to Pre-mRNA cleavage
complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
[Homo sapiens]; contains Prosite PS00028: Zinc finger,
C2H2 type, domain
Length = 828
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = -1
Query: 273 SSLGHWAFTATTA 235
SS+GHWAF++T A
Sbjct: 343 SSIGHWAFSSTNA 355
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,239,528
Number of Sequences: 28952
Number of extensions: 195078
Number of successful extensions: 538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 536
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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