Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K04
         (434 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434     29   2.2  
10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193           27   8.7  
01_06_0269 - 28043862-28043966,28044638-28044931                       27   8.7  

>03_06_0456 + 34057986-34058186,34058295-34058978,34059063-34059434
          Length = 418

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 374 RTLPLQIHAILFIHLKYLLFSICGYL 297
           R  P+ +HAI  +   Y+ F +CGYL
Sbjct: 246 RFRPVLLHAIAGVTAVYVCFGVCGYL 271


>10_05_0097 + 9145478-9145777,9146590-9146785,9146949-9147193
          Length = 246

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -2

Query: 370 PFPYKFMRYYSYI*NIYCFLYVV 302
           P   KF++Y++ I ++YCF  V+
Sbjct: 179 PMEEKFLKYFTAIPHLYCFALVL 201


>01_06_0269 - 28043862-28043966,28044638-28044931
          Length = 132

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 364 GRVRREPNFQCFILDTL 414
           GR+ REP+F C+I+ TL
Sbjct: 53  GRLFREPHFSCYIVCTL 69


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,788,913
Number of Sequences: 37544
Number of extensions: 100466
Number of successful extensions: 153
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)