Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K04
         (434 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical ...    29   1.5  
Z73972-9|CAB60280.2|  353|Caenorhabditis elegans Hypothetical pr...    27   5.9  
Z71177-10|CAB60279.2|  353|Caenorhabditis elegans Hypothetical p...    27   5.9  

>AF101316-5|AAC69233.2|   99|Caenorhabditis elegans Hypothetical
           protein F52F10.1 protein.
          Length = 99

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 372 YPSLTNSCDIIHTFKIFTVFY 310
           +PS TN C I+HTF    +++
Sbjct: 3   WPSKTNKCQILHTFSFSRIYF 23


>Z73972-9|CAB60280.2|  353|Caenorhabditis elegans Hypothetical
           protein F15H10.8 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 428 VIHDYNVSKMKH*KFGSLRTLPLQIHAILFIHLKYLLFSICGYLNRNS 285
           + HD+NV   K  +F   R   L   AI+F+ + +L+F++  + + NS
Sbjct: 6   LFHDFNVRTSKFKEFYRYRKSFLHYCAIIFVVI-FLVFNLFSFDSNNS 52


>Z71177-10|CAB60279.2|  353|Caenorhabditis elegans Hypothetical
           protein F15H10.8 protein.
          Length = 353

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 15/48 (31%), Positives = 27/48 (56%)
 Frame = -1

Query: 428 VIHDYNVSKMKH*KFGSLRTLPLQIHAILFIHLKYLLFSICGYLNRNS 285
           + HD+NV   K  +F   R   L   AI+F+ + +L+F++  + + NS
Sbjct: 6   LFHDFNVRTSKFKEFYRYRKSFLHYCAIIFVVI-FLVFNLFSFDSNNS 52


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,371,544
Number of Sequences: 27780
Number of extensions: 107158
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)