Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K03
(535 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43) 144 5e-35
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0) 128 4e-30
SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09) 112 2e-25
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018) 99 3e-21
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0) 51 5e-07
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.016
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34) 36 0.016
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 36 0.021
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26) 36 0.021
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07) 36 0.027
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.036
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.084
SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12) 33 0.15
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10) 30 1.4
SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53) 29 3.2
SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0) 29 3.2
SB_6746| Best HMM Match : rve (HMM E-Value=2.4) 29 3.2
SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41) 28 4.2
SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_4624| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_8252| Best HMM Match : rve (HMM E-Value=0.13) 27 9.6
>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
Length = 547
Score = 144 bits (348), Expect = 5e-35
Identities = 62/128 (48%), Positives = 92/128 (71%)
Frame = +1
Query: 133 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVT 312
Y G +DKRT+EK+E+EA+E + ++ +W LD + ER++G T+++ F+T + T
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGNTVEVGRAAFDTDTKHFT 225
Query: 313 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 492
++DAPGH+ F+ NMI+G +QAD VL+++A GEFE G + GQTREHA+LA T GVK L
Sbjct: 226 LLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAMLAKTAGVKHL 285
Query: 493 IVGVNKMD 516
++ VNKMD
Sbjct: 286 VILVNKMD 293
>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
Length = 322
Score = 128 bits (308), Expect = 4e-30
Identities = 58/60 (96%), Positives = 59/60 (98%)
Frame = +1
Query: 193 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQ 372
MGKGSFKYAWVLDKLKAERERGITIDIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 1 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60
>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
Length = 123
Score = 112 bits (269), Expect = 2e-25
Identities = 50/84 (59%), Positives = 65/84 (77%)
Frame = +1
Query: 265 IDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 444
+D+ L +F+T +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG GQ
Sbjct: 1 MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60
Query: 445 TREHALLAFTLGVKQLIVGVNKMD 516
TREHA+L +LGV QLIV +NK+D
Sbjct: 61 TREHAILVRSLGVTQLIVAINKLD 84
>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
Length = 106
Score = 98.7 bits (235), Expect = 3e-21
Identities = 44/49 (89%), Positives = 47/49 (95%)
Frame = +1
Query: 49 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 195
M KEK+HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1 MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49
>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 359
Score = 51.2 bits (117), Expect = 5e-07
Identities = 29/110 (26%), Positives = 52/110 (47%)
Frame = +1
Query: 82 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERERGI 261
+I H D+GK+T T L+ G I +EA + K D ++ ER+RGI
Sbjct: 15 IISHPDAGKTTLTEKLLLFGGAI---------QEAGAVKSNKIKKGATSDFMEIERQRGI 65
Query: 262 TIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 411
++ ++ F + I+D PGH+DF ++ + D ++++ G
Sbjct: 66 SVATSVLAFNYRDKKINILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 36.3 bits (80), Expect = 0.016
Identities = 25/65 (38%), Positives = 31/65 (47%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252
N ++ HVD GKST L+ G I K + K VLDKL+ ERE
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK----------------QVLDKLQVERE 1986
Query: 253 RGITI 267
RGIT+
Sbjct: 1987 RGITV 1991
>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
Length = 240
Score = 36.3 bits (80), Expect = 0.016
Identities = 25/87 (28%), Positives = 36/87 (41%)
Frame = +1
Query: 256 GITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 435
GIT I + + G + +D PGH F G D +++VAA
Sbjct: 123 GITQHIGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP----- 177
Query: 436 NGQTREHALLAFTLGVKQLIVGVNKMD 516
QT+E A GV +I +NK+D
Sbjct: 178 --QTKEAISHAQAAGV-PIIFAINKID 201
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 35.9 bits (79), Expect = 0.021
Identities = 34/122 (27%), Positives = 52/122 (42%), Gaps = 4/122 (3%)
Frame = +1
Query: 58 EKVHI-NIVVIGHVDSGKSTTTGHLIYKCGGID--KRTIEKFEKEAQEMGKGSFKYAWVL 228
+K++I N+ VI HVD GKST T L+ K G I K +F ++
Sbjct: 14 KKLNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAAAKAGETRFTDTRKDEQDRCITIKSTA 73
Query: 229 DKLKAERERGITIDIALWKFETGK-YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 405
L E I K + + + +ID+PGH DF + D A+++V
Sbjct: 74 ISLYYELPESDFEYITQPKDPKERGFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCV 133
Query: 406 TG 411
+G
Sbjct: 134 SG 135
>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
Length = 541
Score = 35.9 bits (79), Expect = 0.021
Identities = 26/95 (27%), Positives = 41/95 (43%)
Frame = +1
Query: 232 KLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 411
+ K E ER ITI + Y +D PGH + M+ G + D A+L++A
Sbjct: 49 RFKNELERNITIKLG--------YANAKVDCPGHDILMATMLNGAAVMDAALLLIAGNES 100
Query: 412 EFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 516
QT EH + +K +++ NK+D
Sbjct: 101 ------CPQPQTSEHLAAIEIMKLKHILILQNKID 129
>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
Length = 203
Score = 35.5 bits (78), Expect = 0.027
Identities = 39/135 (28%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Frame = +1
Query: 55 KEKV-HINIVVIGHVDSGKSTTTGHL--IYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 225
KE++ + NI V+GHVDSGK++ L DK + ++G SF+ A +
Sbjct: 30 KERILNFNIGVLGHVDSGKTSLAKALSTTASTASFDKNPQSQERGITLDLGFSSFQVA-L 88
Query: 226 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 405
+ L R G D+ +T++D PGH IK +I G A +I G
Sbjct: 89 PEHL---RSAGSEHDLL---------QMTLVDCPGHASLIKTIIGG------AQIIGECG 130
Query: 406 TGEFEAGISKNGQTR 450
T E G ++G+ +
Sbjct: 131 T--IEGGFGQSGKVK 143
>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 545
Score = 35.1 bits (77), Expect = 0.036
Identities = 31/89 (34%), Positives = 43/89 (48%), Gaps = 2/89 (2%)
Frame = +1
Query: 256 GITIDIA--LWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 429
GIT I L K +G+ +T ID PGH F G + D VL+VAA G
Sbjct: 60 GITQHIGAFLVKLPSGEK-ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----K 114
Query: 430 SKNGQTREHALLAFTLGVKQLIVGVNKMD 516
++ ++ HA+ A LIV +NK+D
Sbjct: 115 TQTVESIRHAMHAKV----PLIVAINKID 139
>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 539
Score = 33.9 bits (74), Expect = 0.084
Identities = 35/135 (25%), Positives = 55/135 (40%), Gaps = 6/135 (4%)
Frame = +1
Query: 25 IVIRD*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYK--CGGIDKRTIEKFE--KEAQE 192
+++R P ++ I + V+G+V+SGKST G L Y G + + F E Q
Sbjct: 99 VLVRQVPD-DQQFTDIRMAVLGNVESGKSTLLGVLTYDELDNGQGRARLNLFRHLHEIQS 157
Query: 193 MGKGSFKYAWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTS- 369
S + + E A E +T ID GH ++K I G +
Sbjct: 158 GRTSSISHEILGFSCTGEVVNYSDGRSAEDVCEQSSKLITFIDLAGHHKYMKTTIFGLTG 217
Query: 370 -QADCAVLIVAAGTG 411
D A+L++A G
Sbjct: 218 HSPDYAMLVIAGNAG 232
>SB_1541| Best HMM Match : MMR_HSR1 (HMM E-Value=0.12)
Length = 347
Score = 33.1 bits (72), Expect = 0.15
Identities = 30/109 (27%), Positives = 47/109 (43%), Gaps = 9/109 (8%)
Frame = +1
Query: 64 VHINIVVIGHVDSGKST-----TTGHLIYKCGGIDKRTI-EKFEKEA---QEMGKGSFKY 216
+ + + V+G+VD+GKST T G L G +R K E E+ +G +
Sbjct: 228 MEVRVAVVGNVDAGKSTLLGVLTHGELDNGRGTARQRLFRHKHEMESGRTSSVGNDILGF 287
Query: 217 AWVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITG 363
+ + G +D A E+ K +T ID GH ++K I G
Sbjct: 288 DNTGQVVNKAEQHGANVDWAKICKESSK-VITFIDLAGHERYLKTTIFG 335
>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
Length = 783
Score = 29.9 bits (64), Expect = 1.4
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 313 IIDAPGHRDFIKNMITGTSQADCAVLIV 396
IID PGH F G+S D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709
>SB_39016| Best HMM Match : Extensin_2 (HMM E-Value=0.53)
Length = 287
Score = 28.7 bits (61), Expect = 3.2
Identities = 24/108 (22%), Positives = 43/108 (39%)
Frame = -3
Query: 506 FTPTISCLTPSVKASRACSRVCPFFEIPASNSPVPAATISTAQSA*DVPVIMFLMKSLCP 327
F P+ P+ A+ +PA+ +P PA +A +A P + + S P
Sbjct: 81 FAPSAPLAAPAQVAAAPAPAAAAPAPVPAAAAPAPAPAAPSAAAA---PAPVRSVPSTSP 137
Query: 326 GASMMVT*YLPVSNFQRAISMVIPRSRSAFSLSNTQAYLKEPLPISWA 183
+ T Y P + Q++ + S S + + Y P P ++A
Sbjct: 138 SSVRSATPYYPQTQQQQS---SVSSSYSYYPRAAPSYYYSPPAPAAYA 182
>SB_52347| Best HMM Match : TPR_1 (HMM E-Value=0)
Length = 687
Score = 28.7 bits (61), Expect = 3.2
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -3
Query: 392 ISTAQSA*DVPVIMFLMKSLCPGASMMVT*YLPVSNFQRAISMVI 258
I QSA DV ++ L L G + ++ +LP SNF + V+
Sbjct: 331 IPLIQSAKDVRILAVLAMLLTIGLAFLIVPFLPASNFFFRVGFVV 375
>SB_6746| Best HMM Match : rve (HMM E-Value=2.4)
Length = 488
Score = 28.7 bits (61), Expect = 3.2
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = +3
Query: 360 WNVSS*LRRAYCRRWYW*IRSRYLKERTNA*TRSARFHTRSQATDCRSKQNG 515
W + L YCRRW I S L+ER + T A+ T T+ Q G
Sbjct: 313 WRQAQLLAPHYCRRWLEYIPS--LQERRQSPTNQAKNQTGKNPTNQAKNQTG 362
>SB_6742| Best HMM Match : EGF_CA (HMM E-Value=5.40004e-41)
Length = 653
Score = 28.3 bits (60), Expect = 4.2
Identities = 22/66 (33%), Positives = 26/66 (39%), Gaps = 2/66 (3%)
Frame = +3
Query: 162 HRKVREGSPGNG*GFLQIRLGIGQTKGRA*AWYHHRYCSLEVRNRQILCH--HHRRSWTQ 335
H V P G L Q K + +HHRYC + V H HHRR +
Sbjct: 58 HVMVNVSQPSGGKLCFSFELSGFQGKNVSSFDHHHRYCIIIVTVSWSFDHHNHHRR---R 114
Query: 336 RFHQEH 353
R HQ H
Sbjct: 115 RRHQHH 120
>SB_22789| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 796
Score = 27.5 bits (58), Expect = 7.3
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 2/75 (2%)
Frame = +1
Query: 82 VIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKG-SFKY-AWVLDKLKAERER 255
++G VD GK+ G + Y+ G + T+E + KG ++K+ +D K E+
Sbjct: 623 IVGTVDIGKTVDIGKVSYEKGWTYEFTVETVDIGKVSDAKGRTYKFIVETVDIGKVSYEK 682
Query: 256 GITIDIALWKFETGK 300
G T + + GK
Sbjct: 683 GRTYKFIVETVDIGK 697
>SB_4624| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 173
Score = 27.5 bits (58), Expect = 7.3
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 265 W*YHAHARPLVCPIPKRI*RNPYPF 191
W +H H+RP+ PIP + + P +
Sbjct: 130 WQFHQHSRPMAVPIPYYLYQAPIQY 154
>SB_20121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2306
Score = 27.1 bits (57), Expect = 9.6
Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
Frame = -2
Query: 489 LLDSECESEQSVFTRLSVL*DTGFEFTSTSGDNK-HGAVSLRRSSDHVLDEISVSRSVDD 313
L +SE E+ V+ + G F GD + H V S+D +DEIS V D
Sbjct: 2109 LFESEELDEEEVYREII---HPGGTFVKYYGDQEEHPMVHSNYSTDRSVDEISKKGMVVD 2165
Query: 312 GD 307
GD
Sbjct: 2166 GD 2167
>SB_8252| Best HMM Match : rve (HMM E-Value=0.13)
Length = 264
Score = 27.1 bits (57), Expect = 9.6
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +3
Query: 309 HHHRRSWTQRFHQEHDH 359
HHHRR +R H H H
Sbjct: 238 HHHRRRRRRRHHHHHHH 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,040,664
Number of Sequences: 59808
Number of extensions: 357857
Number of successful extensions: 1040
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 890
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1203486867
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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