Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K03
(535 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 293 6e-80
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 293 6e-80
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 293 6e-80
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 293 6e-80
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 172 1e-43
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 165 2e-41
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 100 1e-21
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 95 3e-20
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 56 2e-08
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 56 2e-08
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 51 4e-07
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 50 7e-07
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 49 2e-06
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 46 2e-05
At5g13650.2 68418.m01585 elongation factor family protein contai... 40 8e-04
At5g13650.1 68418.m01584 elongation factor family protein contai... 40 8e-04
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 39 0.002
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 39 0.002
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 39 0.002
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 38 0.006
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 37 0.007
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 36 0.017
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 36 0.017
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.16
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 32 0.28
At3g01360.1 68416.m00057 expressed protein contains Pfam profile... 30 0.84
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 0.84
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 30 0.84
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 1.1
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 1.1
At1g23200.1 68414.m02898 pectinesterase family protein contains ... 30 1.1
At3g60730.1 68416.m06794 pectinesterase family protein contains ... 27 5.9
At3g56520.1 68416.m06285 no apical meristem (NAM) family protein... 27 5.9
At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 k... 27 7.9
At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family... 27 7.9
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 293 bits (718), Expect = 6e-80
Identities = 139/162 (85%), Positives = 146/162 (90%)
Frame = +1
Query: 49 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 228
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 229 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 408
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 409 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 534
G FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P Y
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 293 bits (718), Expect = 6e-80
Identities = 139/162 (85%), Positives = 146/162 (90%)
Frame = +1
Query: 49 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 228
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 229 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 408
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 409 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 534
G FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P Y
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 293 bits (718), Expect = 6e-80
Identities = 139/162 (85%), Positives = 146/162 (90%)
Frame = +1
Query: 49 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 228
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 229 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 408
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 409 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 534
G FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P Y
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 293 bits (718), Expect = 6e-80
Identities = 139/162 (85%), Positives = 146/162 (90%)
Frame = +1
Query: 49 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 228
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K SFKYAWVL
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVL 60
Query: 229 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 408
DKLKAERERGITIDIALWKFET KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + T
Sbjct: 61 DKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTT 120
Query: 409 GEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPY 534
G FEAGISK+GQTREHALLAFTLGVKQ+I NKMD+T P Y
Sbjct: 121 GGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKY 162
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 172 bits (419), Expect = 1e-43
Identities = 76/150 (50%), Positives = 109/150 (72%), Gaps = 1/150 (0%)
Frame = +1
Query: 70 INIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAER 249
+N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGSF YAW LD+ ER
Sbjct: 240 LNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGSFAYAWALDESAEER 299
Query: 250 ERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGI 429
ERGIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG
Sbjct: 300 ERGITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGF 359
Query: 430 SK-NGQTREHALLAFTLGVKQLIVGVNKMD 516
GQTREHA + GV+Q+IV +NKMD
Sbjct: 360 DNLKGQTREHARVLRGFGVEQVIVAINKMD 389
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 165 bits (401), Expect = 2e-41
Identities = 76/153 (49%), Positives = 108/153 (70%)
Frame = +1
Query: 58 EKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 237
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S+ A+++D
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYMAYIMDTN 157
Query: 238 KAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEF 417
+ ER +G T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEF
Sbjct: 158 EEERLKGKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEF 217
Query: 418 EAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 516
E G + GQTREH LA TLGV +LIV VNKMD
Sbjct: 218 ETGYERGGQTREHVQLAKTLGVSKLIVVVNKMD 250
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 99.5 bits (237), Expect = 1e-21
Identities = 58/160 (36%), Positives = 84/160 (52%)
Frame = +1
Query: 46 KMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 225
K ++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 72 KFERKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE--------------- 116
Query: 226 LDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 405
+D ER RGITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+
Sbjct: 117 IDAAPEERARGITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGA 176
Query: 406 TGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTE 525
G QT+EH LLA +GV ++V +NK D +
Sbjct: 177 DGPMP-------QTKEHILLAKQVGVPDMVVFLNKEDQVD 209
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 94.7 bits (225), Expect = 3e-20
Identities = 58/159 (36%), Positives = 82/159 (51%)
Frame = +1
Query: 55 KEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDK 234
+ K H+N+ IGHVD GK+T T + K E GK +DK
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLTAAIT---------------KVLAEEGKAKAIAFDEIDK 107
Query: 235 LKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGE 414
E++RGITI A ++ET K + +D PGH D++KNMITG +Q D +L+V+ G
Sbjct: 108 APEEKKRGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDGP 167
Query: 415 FEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 531
QT+EH LLA +GV L+ +NK+D + P
Sbjct: 168 MP-------QTKEHILLARQVGVPSLVCFLNKVDVVDDP 199
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 55.6 bits (128), Expect = 2e-08
Identities = 41/128 (32%), Positives = 61/128 (47%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 253 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 432
+GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSIT 176
Query: 433 KNGQTREH 456
+ Q R +
Sbjct: 177 VDRQMRRY 184
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 55.6 bits (128), Expect = 2e-08
Identities = 41/128 (32%), Positives = 61/128 (47%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252
NI + H+DSGK+T T +++ G I E E ++ G G+ +D + ERE
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRIH----EIHEVRGRD-GVGA-----KMDSMDLERE 116
Query: 253 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 432
+GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 117 KGITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSIT 176
Query: 433 KNGQTREH 456
+ Q R +
Sbjct: 177 VDRQMRRY 184
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 51.2 bits (117), Expect = 4e-07
Identities = 36/113 (31%), Positives = 53/113 (46%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252
NI ++ HVD GK+T HLI GG + GK F +D L E+
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG--------GVLHPRLAGKLRF-----MDYLDEEQR 57
Query: 253 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 411
R IT+ + + Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 58 RAITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 50.4 bits (115), Expect = 7e-07
Identities = 36/117 (30%), Positives = 56/117 (47%)
Frame = +1
Query: 61 KVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLK 240
K + NI ++ H+D+GK+TTT ++Y G K E+ +G+ W ++
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTGRNYK---------IGEVHEGTATMDW----ME 140
Query: 241 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 411
E+ERGITI A K+ + IID PGH DF + D A+ + + G
Sbjct: 141 QEQERGITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 197
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 48.8 bits (111), Expect = 2e-06
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 4/117 (3%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252
N +I H+D GKST L+ G + R + K F LD + ERE
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDM-----------KEQF-----LDNMDLERE 131
Query: 253 RGITIDIAL----WKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 411
RGITI + + +E + + +ID PGH DF + + + A+L+V A G
Sbjct: 132 RGITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 45.6 bits (103), Expect = 2e-05
Identities = 52/169 (30%), Positives = 70/169 (41%), Gaps = 9/169 (5%)
Frame = +1
Query: 37 D*PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKY 216
D K EK+ N +I H+D GKST L+ G I K G G +Y
Sbjct: 57 DLTKFPSEKIR-NFSIIAHIDHGKSTLADRLMELTGTIKK-------------GHGQPQY 102
Query: 217 AWVLDKLKAERERGITIDIALWKF---------ETGKYYVTIIDAPGHRDFIKNMITGTS 369
LDKL +RERGIT+ E Y + +ID PGH DF + S
Sbjct: 103 ---LDKL--QRERGITVKAQTATMFYENKVEDQEASGYLLNLIDTPGHVDFSYEVSRSLS 157
Query: 370 QADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 516
A+L+V A G QT + LAF + ++ +NK+D
Sbjct: 158 ACQGALLVVDAAQG-------VQAQTVANFYLAFEANL-TIVPVINKID 198
>At5g13650.2 68418.m01585 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 676
Score = 40.3 bits (90), Expect = 8e-04
Identities = 43/148 (29%), Positives = 62/148 (41%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 85 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 129
Query: 253 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 432
RGITI V IID PGH DF + + D +L+V + G
Sbjct: 130 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMP---- 185
Query: 433 KNGQTREHALLAFTLGVKQLIVGVNKMD 516
QTR A G ++V VNK+D
Sbjct: 186 ---QTRFVLKKALEFG-HAVVVVVNKID 209
>At5g13650.1 68418.m01584 elongation factor family protein contains
Pfam profiles: PF00009 elongation factor Tu GTP binding
domain,PF00679 elongation factor G C-terminus, PF03144
elongation factor Tu domain 2
Length = 675
Score = 40.3 bits (90), Expect = 8e-04
Identities = 43/148 (29%), Positives = 62/148 (41%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252
NI ++ HVD GK+T ++ + K ++ Q M + ++D ERE
Sbjct: 84 NIAIVAHVDHGKTTLVDSMLRQA---------KVFRDNQVMQER------IMDSNDLERE 128
Query: 253 RGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 432
RGITI V IID PGH DF + + D +L+V + G
Sbjct: 129 RGITILSKNTSITYKNTKVNIIDTPGHSDFGGEVERVLNMVDGVLLVVDSVEGPMP---- 184
Query: 433 KNGQTREHALLAFTLGVKQLIVGVNKMD 516
QTR A G ++V VNK+D
Sbjct: 185 ---QTRFVLKKALEFG-HAVVVVVNKID 208
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 38.7 bits (86), Expect = 0.002
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Frame = +1
Query: 43 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 213
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 214 YAWVLDKLK---------AERERGITIDIALWKF--ETGKYYVTIIDAPGHRDFIKNMIT 360
Y DK + +E T D+ ++ T + +V+ +D PGH + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 361 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 516
G + D A+L++AA QT EH + +K +I+ NK+D
Sbjct: 147 GAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRLKHIIILQNKID 192
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 38.7 bits (86), Expect = 0.002
Identities = 45/172 (26%), Positives = 76/172 (44%), Gaps = 14/172 (8%)
Frame = +1
Query: 43 PKMGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDK-RTIEKFEKEAQ-EMGKGSFK- 213
P++ + INI IGHV GKST ++ G+ R + E+ ++G + K
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST----IVKAISGVQTVRFKNELERNITIKLGYANAKI 86
Query: 214 YAWVLDKLK---------AERERGITIDIALWKF--ETGKYYVTIIDAPGHRDFIKNMIT 360
Y DK + +E T D+ ++ T + +V+ +D PGH + M+
Sbjct: 87 YKCEDDKCPRPMCYKSYGSGKEDNPTCDVPGFENCKMTLRRHVSCVDCPGHDILMATMLN 146
Query: 361 GTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 516
G + D A+L++AA QT EH + +K +I+ NK+D
Sbjct: 147 GAAIVDGALLLIAANES------CPQPQTAEHLASVDMMRLKHIIILQNKID 192
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 38.7 bits (86), Expect = 0.002
Identities = 30/112 (26%), Positives = 50/112 (44%), Gaps = 4/112 (3%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRT---IEKFEKEAQEMGKG-SFKYAWVLDKLK 240
N+ VI HVD GKST T L+ G I + + + A E +G + K + +
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYE 80
Query: 241 AERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 396
E ++ + +Y + +ID+PGH DF + D A+++V
Sbjct: 81 MTDE---SLKSFTGARDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 37.5 bits (83), Expect = 0.006
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +1
Query: 304 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 483
+V+ +D PGH + M+ G + D A+LI+AA QT EH + +
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAANE------TCPQPQTAEHLASVDMMHL 173
Query: 484 KQLIVGVNKMD 516
K +I+ NK+D
Sbjct: 174 KDIIIIQNKID 184
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 37.1 bits (82), Expect = 0.007
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 304 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 483
+V+ +D PGH + M+ G + D A+L++AA QT EH + +
Sbjct: 122 HVSFVDCPGHDILMATMLNGAAIMDGALLLIAANE------TCPQPQTSEHLAAVEIMQL 175
Query: 484 KQLIVGVNKMD 516
K +I+ NK+D
Sbjct: 176 KHIIILQNKID 186
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.9 bits (79), Expect = 0.017
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 253 RGITI-----DIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 411
R I+I + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 35.9 bits (79), Expect = 0.017
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 5/118 (4%)
Frame = +1
Query: 73 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 252
N+ ++GH+ GK+ L+ + + K EK KY D E+E
Sbjct: 140 NVALVGHLQHGKTVFMDMLVEQTHHMSTFNA-KNEKH--------MKYT---DTRVDEQE 187
Query: 253 RGITI-----DIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 411
R I+I + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 188 RNISIKAVPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 307 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 411
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 31.9 bits (69), Expect = 0.28
Identities = 28/99 (28%), Positives = 41/99 (41%), Gaps = 4/99 (4%)
Frame = +1
Query: 232 KLKAERERGITIDIALWKFET---GKYYVTI-IDAPGHRDFIKNMITGTSQADCAVLIVA 399
K+ A GIT I +K GK + +D PGH F G D A+++VA
Sbjct: 525 KVAASEAGGITQGIGAYKVSVPVDGKLQSCVFLDTPGHEAFGAMRARGARVTDIAIIVVA 584
Query: 400 AGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMD 516
A G QT E A+ +++ +NK+D
Sbjct: 585 ADDG-------IRPQTNE-AIAHAKAAAVPIVIAINKID 615
>At3g01360.1 68416.m00057 expressed protein contains Pfam profile
PF04819: Family of unknown function (DUF716) (Plant
viral-response family)
Length = 319
Score = 30.3 bits (65), Expect = 0.84
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 1/71 (1%)
Frame = +1
Query: 316 IDAPGHRDFIKNMITGTSQADCAV-LIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 492
I GH D+ + T Q +C + L+V TG F +KNG R+ LG +
Sbjct: 226 IKCKGHGDYHRAKAIATLQFNCHLALMVVVATGLFSVIANKNGYLRQDHSKYRPLGAELE 285
Query: 493 IVGVNKMDSTE 525
+ +DS E
Sbjct: 286 NLSTFTLDSDE 296
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 30.3 bits (65), Expect = 0.84
Identities = 21/68 (30%), Positives = 34/68 (50%)
Frame = +1
Query: 313 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 492
+ID PGH F G+S D A+L+V + + G+ QT E +L + +
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV-----DIKHGLEP--QTIE-SLNLLRMRNTEF 756
Query: 493 IVGVNKMD 516
I+ +NK+D
Sbjct: 757 IIALNKVD 764
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 30.3 bits (65), Expect = 0.84
Identities = 22/70 (31%), Positives = 33/70 (47%)
Frame = +1
Query: 307 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 486
+ +ID PGH F G++ D A+L+V + G+ QT E L VK
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV-----DIMRGLEP--QTIESLNLLRRRNVK 610
Query: 487 QLIVGVNKMD 516
I+ +NK+D
Sbjct: 611 -FIIALNKVD 619
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 313 IIDAPGHRDFIKNMITGTSQADCAVLIV 396
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 313 IIDAPGHRDFIKNMITGTSQADCAVLIV 396
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g23200.1 68414.m02898 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 554
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = -2
Query: 423 GFEFTSTSGDNKHGAVSLRRSSD 355
G F +T+G KH AV+LR SSD
Sbjct: 344 GITFENTAGPEKHQAVALRSSSD 366
>At3g60730.1 68416.m06794 pectinesterase family protein contains
Pfam profile: PF01095 pectinesterase
Length = 519
Score = 27.5 bits (58), Expect = 5.9
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = -2
Query: 414 FTSTSGDNKHGAVSLRRSSD 355
F +T+G +KH AV+LR SSD
Sbjct: 303 FENTAGPHKHQAVALRVSSD 322
>At3g56520.1 68416.m06285 no apical meristem (NAM) family protein
similar to nam-like protein 5 (GI:21105738 ) [Petunia x
hybrida]; hypothetical protein SENU5, senescence
up-regulated - Lycopersicon eculentum, PIR:T07182
Length = 175
Score = 27.5 bits (58), Expect = 5.9
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Frame = -1
Query: 208 RNPYPFPGLPSRTFRWYVCRYH-RICRSSDQLLWT 107
R+P+ PG PS +Y CR S+ LWT
Sbjct: 50 RHPHDLPGYPSEEHWYYFCRKRDNQVTSNSHNLWT 84
>At2g43370.1 68415.m05392 U1 small nuclear ribonucleoprotein 70 kDa,
putative
Length = 333
Score = 27.1 bits (57), Expect = 7.9
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 288 RNRQILCHHHRRSWTQRFH 344
R++ + HHHRRS++Q H
Sbjct: 312 RHKHLPSHHHRRSYSQDHH 330
>At1g72600.1 68414.m08395 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 135
Score = 27.1 bits (57), Expect = 7.9
Identities = 8/15 (53%), Positives = 10/15 (66%)
Frame = +3
Query: 309 HHHRRSWTQRFHQEH 353
HH R+ W QR H +H
Sbjct: 70 HHRRKKWRQRRHHKH 84
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,860,573
Number of Sequences: 28952
Number of extensions: 243159
Number of successful extensions: 868
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 851
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 984125600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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