Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K02
(427 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch... 82 3e-17
SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac... 81 7e-17
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p... 31 0.057
SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|c... 28 0.70
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce... 28 0.70
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce... 27 0.92
SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit |Sch... 27 0.92
SPBC8D2.12c |||mitochondrial DNA binding protein |Schizosaccharo... 27 0.92
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ... 26 2.8
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe... 26 2.8
SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|... 25 3.7
SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase Ceg1|Schizosacc... 25 3.7
SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces p... 25 3.7
SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10 |... 25 4.9
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 25 4.9
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 4.9
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 25 4.9
SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit Ssr3|Schizos... 24 8.6
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb... 24 8.6
SPBC16A3.11 |eso1||sister chromatid cohesion protein Eso1|Schizo... 24 8.6
>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 3|||Manual
Length = 136
Score = 82.2 bits (194), Expect = 3e-17
Identities = 34/62 (54%), Positives = 47/62 (75%)
Frame = +1
Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
M KI+KPGKV LV GR+AG+K ++++N D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALVTRGRFAGKKVVILQNVDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 205 KI 210
+I
Sbjct: 61 RI 62
Score = 73.7 bits (173), Expect = 1e-14
Identities = 31/76 (40%), Positives = 49/76 (64%), Gaps = 2/76 (2%)
Frame = +2
Query: 206 KFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 379
+ RS++KPF+K +NYNHLMPTRY+++ K + +P++R + + FEE
Sbjct: 61 RIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSAAKKTVKNTFEE 120
Query: 380 RYKSGKNKWFFQKLRF 427
+Y++GK+ WFF LRF
Sbjct: 121 KYQTGKSAWFFTPLRF 136
>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 136
Score = 81.0 bits (191), Expect = 7e-17
Identities = 36/76 (47%), Positives = 50/76 (65%), Gaps = 2/76 (2%)
Frame = +2
Query: 206 KFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNTRVRFEE 379
+ RS++KPF+K VNYNHLMPTRY+++ K +A K+P +R R + FEE
Sbjct: 61 RIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSAARKTVKKTFEE 120
Query: 380 RYKSGKNKWFFQKLRF 427
+Y+SGK+ WFF LRF
Sbjct: 121 KYQSGKSAWFFTPLRF 136
Score = 78.6 bits (185), Expect = 4e-16
Identities = 32/62 (51%), Positives = 46/62 (74%)
Frame = +1
Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
M KI+KPGKV L+ GR+AG+K ++++ D+G+ P+GHA VAG++RYP KV K MG
Sbjct: 1 MVKILKPGKVALITRGRFAGKKVVILQAIDQGSKSHPFGHAVVAGVERYPLKVTKSMGAK 60
Query: 205 KI 210
+I
Sbjct: 61 RI 62
>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 195
Score = 31.5 bits (68), Expect = 0.057
Identities = 10/34 (29%), Positives = 23/34 (67%)
Frame = +1
Query: 16 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 117
P+K+ + PG V ++L+GR+ G++ +V+ ++
Sbjct: 45 PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78
>SPCC1281.06c |||acyl-coA desaturase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 479
Score = 27.9 bits (59), Expect = 0.70
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = +3
Query: 18 IQDG*DYETWKSGAGPQRPVR 80
++ G + E WKSGAG Q P++
Sbjct: 432 VRGGMEVEVWKSGAGAQLPMK 452
>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1131
Score = 27.9 bits (59), Expect = 0.70
Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
Frame = -1
Query: 409 EPFVLSALVSLFETDPCVETQL---LALSWVF 323
EPF ++ ++S ++ PCV T L + L+W F
Sbjct: 120 EPFQIARIISFEKSRPCVSTNLYDSVRLNWYF 151
>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 134
Score = 27.5 bits (58), Expect = 0.92
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 31 KIMKPGKVVLVLSGRYAGRKAIVVKNYD 114
+ ++ G+VVLV G Y G+ A++V D
Sbjct: 6 RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33
>SPAC2F3.01 ||SPAC323.09|mannosyltransferase complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 319
Score = 27.5 bits (58), Expect = 0.92
Identities = 15/41 (36%), Positives = 23/41 (56%)
Frame = +2
Query: 191 GWEKIKFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSA 313
GW+ I +T KI F+ NY+ MP +S ++ +KF A
Sbjct: 97 GWQFILWT-DEKIMSFMNE-NYSWFMPVFHSYPYNIQKFDA 135
>SPBC8D2.12c |||mitochondrial DNA binding protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 293
Score = 27.5 bits (58), Expect = 0.92
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = -2
Query: 78 VPAAEDQHHFSRFHNLTHLGWI 13
+P +HFSRF + T GWI
Sbjct: 7 IPFTRALYHFSRFRSFTTSGWI 28
>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 306
Score = 25.8 bits (54), Expect = 2.8
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 3/44 (6%)
Frame = -3
Query: 152 TKACPYGLSDV-PSS*FFTTMALRPAY--RPLRTSTTFPGFIIL 30
T AC YGL +V S+ FF +++R Y R ++ FP I++
Sbjct: 73 TMACNYGLKNVFSSASFFREVSVRMVYYVRYIQWLINFPLIIVM 116
>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 504
Score = 25.8 bits (54), Expect = 2.8
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = +2
Query: 227 IKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLRFNTR 364
+ PF K Y H + T S S KF + K K R +TR
Sbjct: 39 VSPFFKKERYKHHLETNVSSHQSATKFIEPEPSPTKKTKLTRRDTR 84
>SPAC328.01c ||SPAC3A11.01|karyopherin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1234
Score = 25.4 bits (53), Expect = 3.7
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = -2
Query: 207 FIFSHPFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFT 85
FI F ++ D ESM F+R A +++ Y G T
Sbjct: 1092 FICQQVFQSVILAIHDPYFESMQSDFIRLACIILSYSQGIT 1132
>SPBC2F12.08c |ceg1|pce1|mRNA guanylyltransferase
Ceg1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 402
Score = 25.4 bits (53), Expect = 3.7
Identities = 14/45 (31%), Positives = 19/45 (42%)
Frame = +2
Query: 290 FSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 424
+SF F D K+ K K R E Y +N+W F + R
Sbjct: 284 YSFFAFMYVDEKEWEKLKSFNVPLSERIVECYLDDENRWRFLRFR 328
>SPBP23A10.09 |||GINS complex subunit Psf1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 202
Score = 25.4 bits (53), Expect = 3.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +2
Query: 29 VRL*NLEKWCWSSAAGTQAVKPLS*RITTRAHLTNHTDMLSS 154
+RL L ++CWS ++ S R +LT ++++L++
Sbjct: 94 LRLQRLRQYCWSGGKRMESCLDTSLSTYERDYLTRYSELLAA 135
>SPAC25G10.04c |rec10|rec20|meiotic recombination protein Rec10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 791
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -3
Query: 131 LSDVPSS*FFTTMALRPAYRPLRTSTTFPG 42
L ++P + FF T+ AY P S T G
Sbjct: 689 LEEIPYNKFFKTVEKNEAYNPSSKSATIDG 718
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 265 NANPLFCRLQL*KIQCKGPKRPS*AQEAAFQH 360
N +P+ QL K++ P++PS A +++F H
Sbjct: 271 NISPVSPFAQLVKLEPTSPQKPSFALDSSFSH 302
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 4.9
Identities = 11/39 (28%), Positives = 19/39 (48%)
Frame = +2
Query: 284 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKN 400
+ F K L DP+ R+K F ++ + +Y+ KN
Sbjct: 150 LQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYLKN 188
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.0 bits (52), Expect = 4.9
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 284 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEER 382
VD++ E+F DP+ + NT ++ E+R
Sbjct: 821 VDYAIERFCQFTALDPSSVPGTQLNTAIKVEDR 853
>SPAC23G3.10c |ssr3||SWI/SNF and RSC complex subunit
Ssr3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 425
Score = 24.2 bits (50), Expect = 8.6
Identities = 12/40 (30%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 163 DRYPRKVHK-RMGKNKIHNAVENQAFRKRCKLQSSNANPL 279
D R HK R+ + IH+ V NQ+++++ + Q +N+ +
Sbjct: 70 DSLSRNSHKTRILRMYIHSTVANQSWQQKGENQENNSGDI 109
>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 432
Score = 24.2 bits (50), Expect = 8.6
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 13 YPSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 114
Y ++ G + GK+V+++SG A K+ + + D
Sbjct: 40 YSTESGMLFHAGKLVIIMSGLPARGKSNIAVSID 73
>SPBC16A3.11 |eso1||sister chromatid cohesion protein
Eso1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 872
Score = 24.2 bits (50), Expect = 8.6
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +2
Query: 167 DTRARFIKGWEKI---KFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAK 337
D +R I+G+ K + M + + P ++G L+ + SFE S KD+K P +
Sbjct: 451 DRNSRGIEGFLKKSNDEIYMSTSVSPSIEG--RAKLLNENMRENNSFELSSEKDIKSPKR 508
Query: 338 RKK 346
K+
Sbjct: 509 LKR 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,933,909
Number of Sequences: 5004
Number of extensions: 39711
Number of successful extensions: 133
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 152416050
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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