Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K02
(427 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0) 102 1e-22
SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.099
SB_21429| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.30
SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.30
SB_45708| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.30
SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003) 31 0.30
SB_17913| Best HMM Match : RVP (HMM E-Value=1.1) 31 0.30
SB_7810| Best HMM Match : RVT_1 (HMM E-Value=2.8026e-45) 31 0.30
SB_57324| Best HMM Match : ig (HMM E-Value=1e-26) 29 1.2
SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.8
SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07) 28 3.7
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.7
SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91) 28 3.7
SB_5450| Best HMM Match : eRF1_1 (HMM E-Value=2.6) 28 3.7
SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16) 27 4.9
SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066) 27 6.5
SB_10755| Best HMM Match : Peptidase_M23 (HMM E-Value=7.2) 27 6.5
SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 6.5
SB_39391| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_34021| Best HMM Match : Zip (HMM E-Value=0) 27 6.5
SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.5
SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39) 27 8.6
SB_19554| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.6
SB_41829| Best HMM Match : DUF1649 (HMM E-Value=0) 27 8.6
SB_10224| Best HMM Match : DUF1649 (HMM E-Value=0) 27 8.6
>SB_45618| Best HMM Match : Ribosomal_L27e (HMM E-Value=0)
Length = 168
Score = 102 bits (245), Expect = 1e-22
Identities = 44/61 (72%), Positives = 53/61 (86%)
Frame = +1
Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
MGK +K GKVVLVL GRYAG+KA+++KNYD+G+SDKPYGHA VAG+ RYP KV KRMGK
Sbjct: 1 MGKFIKSGKVVLVLRGRYAGKKALIIKNYDDGSSDKPYGHALVAGVARYPLKVTKRMGKK 60
Query: 205 K 207
+
Sbjct: 61 R 61
Score = 91.5 bits (217), Expect = 3e-19
Identities = 46/76 (60%), Positives = 53/76 (69%), Gaps = 2/76 (2%)
Frame = +2
Query: 200 KIKFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEK-FSAKDL-KDPAKRKKLRFNTRVRF 373
K + RSK+KPFVK NYNHLMPTRYSVD +K KD+ +DPA +KK +
Sbjct: 59 KKRTAKRSKVKPFVKVFNYNHLMPTRYSVDVPLDKQVVNKDVFRDPALKKKALREVKSTL 118
Query: 374 EERYKSGKNKWFFQKL 421
EERYKSGKNKWFFQKL
Sbjct: 119 EERYKSGKNKWFFQKL 134
>SB_16717| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 735
Score = 33.1 bits (72), Expect = 0.099
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = -2
Query: 192 PFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFH 37
P++ V V +E V+ CAL++++ DN + VPA + FH
Sbjct: 265 PYIGYIEVEVSFPEEETGVYLEECALLLVVPDNDYNKRVPAVIGTNIAKAFH 316
>SB_21429| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 840
Score = 31.5 bits (68), Expect = 0.30
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 192 PFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFH 37
P++ V V +E V CAL++++ DN + VPA + FH
Sbjct: 389 PYIGYIEVEVSFPEEETGVHLEECALLLVVPDNDYNKRVPAVIGTNIAKAFH 440
>SB_663| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2028
Score = 31.5 bits (68), Expect = 0.30
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 192 PFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFH 37
P++ V V +E V CAL++++ DN + VPA + FH
Sbjct: 109 PYIGYIEVEVSFPEEETGVHLEECALLLVVPDNDYNKRVPAVIGTNIAKAFH 160
>SB_45708| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1510
Score = 31.5 bits (68), Expect = 0.30
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 192 PFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFH 37
P++ V V +E V CAL++++ DN + VPA + FH
Sbjct: 342 PYIGYIEVEVSFPEEETGVHLEECALLLVVPDNDYNKRVPAVIGTNIAKAFH 393
>SB_18645| Best HMM Match : RVT_1 (HMM E-Value=0.0003)
Length = 1205
Score = 31.5 bits (68), Expect = 0.30
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 192 PFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFH 37
P++ V V +E V CAL++++ DN + VPA + FH
Sbjct: 216 PYIGYIEVEVSFPEEETGVHLEECALLLVVPDNDYNKRVPAVIGTNIAKAFH 267
>SB_17913| Best HMM Match : RVP (HMM E-Value=1.1)
Length = 458
Score = 31.5 bits (68), Expect = 0.30
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 192 PFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFH 37
P++ V V +E V CAL++++ DN + VPA + FH
Sbjct: 303 PYIGYIEVEVSFPEEETGVHLEECALLLVVPDNDYNKRVPAVIGTNIAKAFH 354
>SB_7810| Best HMM Match : RVT_1 (HMM E-Value=2.8026e-45)
Length = 732
Score = 31.5 bits (68), Expect = 0.30
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = -2
Query: 192 PFMNLARVSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFH 37
P++ V V +E V CAL++++ DN + VPA + FH
Sbjct: 255 PYIGYIEVEVSFPEEETGVHLEECALLLVVPDNDYNKRVPAVIGTNIAKAFH 306
>SB_57324| Best HMM Match : ig (HMM E-Value=1e-26)
Length = 947
Score = 29.5 bits (63), Expect = 1.2
Identities = 20/60 (33%), Positives = 29/60 (48%)
Frame = +2
Query: 224 KIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 403
K+K V GVN + L YSV FS+ K + P + +K RF + R K+ + K
Sbjct: 427 KLKCLVTGVN-DPLFNRTYSVWFSYRNGKTKIVGKPRRGEKSRFRSMNGHHLRIKNARVK 485
>SB_35383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 46
Score = 28.3 bits (60), Expect = 2.8
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = +2
Query: 311 AKDL--KDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLRF 427
+KDL + P +K FN + E R++ G K F+++LRF
Sbjct: 2 SKDLLGERPMYARKDAFNAYLTMERRFEKGDIKTFWRELRF 42
>SB_34832| Best HMM Match : SAP (HMM E-Value=1.4e-07)
Length = 1054
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 167 DTRARFIKGWEKIKFTMRSKIKPF 238
DT +F+KGWE R ++PF
Sbjct: 206 DTIVKFVKGWELANSGRRVSVRPF 229
>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4475
Score = 27.9 bits (59), Expect = 3.7
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +2
Query: 188 KGWEKIKFTMRSKIKPFVKGVNYNHLMPTRYSVD 289
+ W+K+K ++ ++ F G + NH+ YS D
Sbjct: 483 RNWDKMKAFLKDFVRAFNVGPDKNHVAAIAYSTD 516
>SB_29343| Best HMM Match : PPI_Ypi1 (HMM E-Value=0.91)
Length = 383
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = +2
Query: 299 EKFSAKDLKDPAKRKKLRFNTRVRFE---ERYKSGKNKWFFQKLR 424
++ S D +D +KRK++RF FE + YK+ FQK R
Sbjct: 237 DETSGNDTEDESKRKRVRFAEGTNFENERQTYKTRVKNITFQKDR 281
>SB_5450| Best HMM Match : eRF1_1 (HMM E-Value=2.6)
Length = 322
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -2
Query: 171 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFH 37
V V +E V CAL++++ DN + VPA + FH
Sbjct: 5 VEVSFPEEETGVHLEECALLLVVPDNDYNKRVPAVIGTNIAKAFH 49
>SB_33373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 27.5 bits (58), Expect = 4.9
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Frame = +2
Query: 188 KGWEKIKFTMRSKIKPFVKGVNYNHLMPTRYS--VDFSFEKFSAKDLKDPAKRKKLRFNT 361
+ W K+K + S IK F G + NH+ YS + +F+ S + + + K+ F
Sbjct: 295 RNWVKMKAFVNSVIKEFTVGPDGNHMAAVVYSTGAEVAFDFNSLQGSQITVEGYKI-FVD 353
Query: 362 RVRFEERY 385
R+R + Y
Sbjct: 354 RMRHQRGY 361
>SB_16188| Best HMM Match : KOW (HMM E-Value=5.7e-16)
Length = 105
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 10 EYPS-KMGKIMKPGKVVLVLSGRYAGRKAIVVKNYD 114
++P+ ++GK K G V V+ GRY G ++V+ D
Sbjct: 58 DFPAHELGKHFKMGDHVKVIGGRYEGDTGLIVRVED 93
>SB_35254| Best HMM Match : Vicilin_N (HMM E-Value=0.066)
Length = 909
Score = 27.1 bits (57), Expect = 6.5
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +2
Query: 308 SAKDLKDPAKRKKLRFNTRVRFEERYKSGKNKWFFQKLR 424
SAK+L++ +RK+ +NT E RY+ K K Q R
Sbjct: 562 SAKELEEELERKREDYNTAAD-ERRYQMAKKKDTLQATR 599
>SB_10755| Best HMM Match : Peptidase_M23 (HMM E-Value=7.2)
Length = 260
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = -2
Query: 228 IFDRIVNFIFSHPFMNLARVSVDAGDESMSVWFVR 124
+F VN + S PF++ R+ DA D S+S W R
Sbjct: 6 VFLMAVNGMKSRPFVHSTRLWGDASDISISKWVRR 40
>SB_40582| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 1568
Score = 27.1 bits (57), Expect = 6.5
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 188 KGWEKIKFTMRSKIKPFVKGVNYNHLMPTRYS 283
+ W K+K + S IK F G + NH+ YS
Sbjct: 1149 RNWVKMKAFVNSVIKEFTVGPDGNHMAAVVYS 1180
>SB_39391| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 27.1 bits (57), Expect = 6.5
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +2
Query: 182 FIKGWEKIKFTMRSKIKPFVKGVNYNHLMPT--RYSVDFSFEKF 307
F +GW++ K+ K F G+ H+M + RY + F E F
Sbjct: 191 FYRGWDEYKWGFGDKNGEFWLGLENIHVMTSQKRYRLRFDMEDF 234
>SB_34021| Best HMM Match : Zip (HMM E-Value=0)
Length = 808
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 167 DTRARFIKGWEKIKFTMRSKIKPFVKGVNYNHLMPT--RYSVDFSFEKF 307
D F +GW++ K +K F G++ H M + RY V F E F
Sbjct: 197 DGSVDFYRGWDEYKRGFGNKEGEFWLGLDNIHAMTSQRRYRVRFDLEDF 245
>SB_11021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1033
Score = 27.1 bits (57), Expect = 6.5
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 167 DTRARFIKGWEKIKFTMRSKIKPFVKGVNYNHLMPT--RYSVDFSFEKF 307
D F +GW++ K +K F G++ H M + RY V F E F
Sbjct: 190 DGSVDFYRGWDEYKRGFGNKDGEFWLGLDNIHAMTSQRRYRVRFDLEDF 238
>SB_31039| Best HMM Match : Fibrinogen_C (HMM E-Value=4.2e-39)
Length = 411
Score = 26.6 bits (56), Expect = 8.6
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
Frame = +2
Query: 167 DTRARFIKGWEKIKFTMRSKIKPFVKGVNYNHLMPT--RYSVDFSFEKF 307
D F +GW++ K K F G++ H M + RY V F E F
Sbjct: 156 DGSVDFYRGWDEYKRGFGDKEGEFWLGLDNIHAMTSQRRYRVRFDLEDF 204
>SB_19554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 172
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +2
Query: 266 MPTRYSVDFSFEKFSAKDLKDPAKRK-KLRFNTRVRFEE 379
MP +YS D +F++ D PA RK K R + F E
Sbjct: 126 MPRQYSCDKTFDEIEEADDLSPATRKRKKRERAKYCFRE 164
>SB_41829| Best HMM Match : DUF1649 (HMM E-Value=0)
Length = 218
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 284 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGK-NKWFFQK 418
+DF++ + + DL KR+ L F +R + +SG+ + F+QK
Sbjct: 60 IDFTYVRCDSDDLDSSLKRQVLGFKDALRGNKGSRSGQISLEFYQK 105
>SB_10224| Best HMM Match : DUF1649 (HMM E-Value=0)
Length = 218
Score = 26.6 bits (56), Expect = 8.6
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Frame = +2
Query: 284 VDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGK-NKWFFQK 418
+DF++ + + DL KR+ L F +R + +SG+ + F+QK
Sbjct: 60 IDFTYVRCDSDDLDSSLKRQVLGFKDALRGNKGSRSGQISLEFYQK 105
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,681,992
Number of Sequences: 59808
Number of extensions: 308834
Number of successful extensions: 846
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 814166562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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