Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K02
(427 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY070827-1|AAL48449.1| 135|Drosophila melanogaster AT27980p pro... 118 3e-27
AE014297-3837|AAF56495.1| 135|Drosophila melanogaster CG4759-PA... 118 3e-27
AE013599-1694|AAF58382.1| 506|Drosophila melanogaster CG17050-P... 32 0.37
AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse tran... 29 3.4
AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprot... 29 3.4
AY070994-1|AAL48616.1| 262|Drosophila melanogaster RE08669p pro... 28 6.0
AE014297-4764|AAF57167.1| 262|Drosophila melanogaster CG11522-P... 28 6.0
AE014297-4763|AAF57166.1| 243|Drosophila melanogaster CG11522-P... 28 6.0
AE014298-686|AAF45990.1| 345|Drosophila melanogaster CG15470-PA... 27 7.9
>AY070827-1|AAL48449.1| 135|Drosophila melanogaster AT27980p
protein.
Length = 135
Score = 118 bits (284), Expect = 3e-27
Identities = 54/77 (70%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +2
Query: 200 KIKFTMRSKIKPFVKGVNYNHLMPTRYSV-DFSFEKFSAKDLKDPAKRKKLRFNTRVRFE 376
K K +SK+KPF+K +NYNHLMPTRY+ D SFEK S KDLKDP KRK RF TRV+FE
Sbjct: 59 KNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKLSPKDLKDPVKRKTHRFQTRVKFE 118
Query: 377 ERYKSGKNKWFFQKLRF 427
YK GKNKWFFQKLRF
Sbjct: 119 SVYKEGKNKWFFQKLRF 135
Score = 108 bits (260), Expect = 3e-24
Identities = 49/73 (67%), Positives = 60/73 (82%)
Frame = +1
Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
M KIMK GK+V+VLSGRYAGRKAI+VK +D+GT +KP+GHA VAGIDRYPRKV K+MGKN
Sbjct: 1 MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYPRKVTKKMGKN 60
Query: 205 KIHNAVENQAFRK 243
K+ + + F K
Sbjct: 61 KLKKKSKVKPFLK 73
>AE014297-3837|AAF56495.1| 135|Drosophila melanogaster CG4759-PA
protein.
Length = 135
Score = 118 bits (284), Expect = 3e-27
Identities = 54/77 (70%), Positives = 60/77 (77%), Gaps = 1/77 (1%)
Frame = +2
Query: 200 KIKFTMRSKIKPFVKGVNYNHLMPTRYSV-DFSFEKFSAKDLKDPAKRKKLRFNTRVRFE 376
K K +SK+KPF+K +NYNHLMPTRY+ D SFEK S KDLKDP KRK RF TRV+FE
Sbjct: 59 KNKLKKKSKVKPFLKSLNYNHLMPTRYTAHDISFEKLSPKDLKDPVKRKTHRFQTRVKFE 118
Query: 377 ERYKSGKNKWFFQKLRF 427
YK GKNKWFFQKLRF
Sbjct: 119 SVYKEGKNKWFFQKLRF 135
Score = 108 bits (260), Expect = 3e-24
Identities = 49/73 (67%), Positives = 60/73 (82%)
Frame = +1
Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
M KIMK GK+V+VLSGRYAGRKAI+VK +D+GT +KP+GHA VAGIDRYPRKV K+MGKN
Sbjct: 1 MRKIMKQGKIVIVLSGRYAGRKAIIVKTHDDGTPEKPFGHALVAGIDRYPRKVTKKMGKN 60
Query: 205 KIHNAVENQAFRK 243
K+ + + F K
Sbjct: 61 KLKKKSKVKPFLK 73
>AE013599-1694|AAF58382.1| 506|Drosophila melanogaster CG17050-PA
protein.
Length = 506
Score = 31.9 bits (69), Expect = 0.37
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +2
Query: 269 PTRYSVDFSFEKFSAKDLKDPAKRKKLRF 355
P Y +F FE+F KDL+ AK K L+F
Sbjct: 60 PKPYVKEFEFERFHLKDLRSDAKFKHLQF 88
>AF365402-2|AAK53386.1| 1059|Drosophila melanogaster reverse
transcriptase-like polymeraseprotein.
Length = 1059
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 369 RTLVLKRSFLRLAGSFRSFALNFSKL 292
RTL RSFL L+G +R F N++KL
Sbjct: 425 RTLKELRSFLGLSGYYRRFIPNYAKL 450
>AF315785-1|AAK01366.1| 437|Drosophila melanogaster pol polyprotein
protein.
Length = 437
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = -2
Query: 369 RTLVLKRSFLRLAGSFRSFALNFSKL 292
RTL RSFL L+G +R F N++KL
Sbjct: 269 RTLKELRSFLGLSGYYRRFIPNYAKL 294
>AY070994-1|AAL48616.1| 262|Drosophila melanogaster RE08669p
protein.
Length = 262
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 10 EYPSKMGKIMKPGKVVLVLSGRYAGRKAIVVK 105
E+ + + PG V+++L+GR+ G++ +++K
Sbjct: 105 EHKRNTRRNLTPGTVLILLAGRHQGKRVVLLK 136
>AE014297-4764|AAF57167.1| 262|Drosophila melanogaster CG11522-PB,
isoform B protein.
Length = 262
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 10 EYPSKMGKIMKPGKVVLVLSGRYAGRKAIVVK 105
E+ + + PG V+++L+GR+ G++ +++K
Sbjct: 105 EHKRNTRRNLTPGTVLILLAGRHQGKRVVLLK 136
>AE014297-4763|AAF57166.1| 243|Drosophila melanogaster CG11522-PA,
isoform A protein.
Length = 243
Score = 27.9 bits (59), Expect = 6.0
Identities = 9/32 (28%), Positives = 22/32 (68%)
Frame = +1
Query: 10 EYPSKMGKIMKPGKVVLVLSGRYAGRKAIVVK 105
E+ + + PG V+++L+GR+ G++ +++K
Sbjct: 86 EHKRNTRRNLTPGTVLILLAGRHQGKRVVLLK 117
>AE014298-686|AAF45990.1| 345|Drosophila melanogaster CG15470-PA
protein.
Length = 345
Score = 27.5 bits (58), Expect = 7.9
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +1
Query: 196 GKNKIHNAVENQAFRKRCKLQSSNANPLFCRLQL*KIQCKGPKRPS*AQEAAFQHKGPFR 375
G N + + N + C SNA L +L K P P+ Q A+ Q + +
Sbjct: 179 GSNNSNISGSNMSSNSNCGTLKSNAKLLPLQLMATPPSRKEPLTPAHPQAASIQAQAQVQ 238
Query: 376 REIQERKEQ 402
++Q++ +Q
Sbjct: 239 HQLQQQHQQ 247
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,637,645
Number of Sequences: 53049
Number of extensions: 434452
Number of successful extensions: 1297
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1249
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1313584398
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -