Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0002_K02
(427 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal prote... 102 1e-22
AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal pro... 102 1e-22
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 31 0.26
AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin for... 31 0.26
AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protei... 31 0.26
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 31 0.26
U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal prote... 29 1.1
Z81056-9|CAB02908.2| 292|Caenorhabditis elegans Hypothetical pr... 28 3.2
Z73425-3|CAA97785.1| 451|Caenorhabditis elegans Hypothetical pr... 27 4.3
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 27 4.3
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 27 4.3
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 27 4.3
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 27 5.6
Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z19154-6|CAC35885.2| 388|Caenorhabditis elegans Hypothetical pr... 27 7.4
U80031-1|AAB37611.1| 392|Caenorhabditis elegans Downstream of d... 27 7.4
AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interfere... 27 7.4
Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 9.8
Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical pr... 26 9.8
>U89308-1|AAB48626.1| 136|Caenorhabditis elegans ribosomal protein
L27 homolog protein.
Length = 136
Score = 102 bits (244), Expect = 1e-22
Identities = 49/73 (67%), Positives = 55/73 (75%)
Frame = +1
Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 205 KIHNAVENQAFRK 243
KI + + F K
Sbjct: 61 KIEKRNKLKPFLK 73
Score = 95.9 bits (228), Expect = 1e-20
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
Frame = +2
Query: 188 KGWEKIKFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNT 361
K K K R+K+KPF+K V+Y HL+PTRYSVD +F+K + + LK P+K++K
Sbjct: 55 KDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEV 114
Query: 362 RVRFEERYKSGKNKWFFQKLRF 427
+ +FEERYK+GKNKWFF KLRF
Sbjct: 115 KSKFEERYKTGKNKWFFTKLRF 136
>AF003143-5|AAK68266.1| 136|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 27 protein.
Length = 136
Score = 102 bits (244), Expect = 1e-22
Identities = 49/73 (67%), Positives = 55/73 (75%)
Frame = +1
Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
MGKIMKPGKVVLVL G+YAGRKA+VVK DEG SD+ Y HA +AGIDRYP KV K MGK
Sbjct: 1 MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDRTYPHAIIAGIDRYPLKVTKDMGKK 60
Query: 205 KIHNAVENQAFRK 243
KI + + F K
Sbjct: 61 KIEKRNKLKPFLK 73
Score = 95.9 bits (228), Expect = 1e-20
Identities = 44/82 (53%), Positives = 59/82 (71%), Gaps = 2/82 (2%)
Frame = +2
Query: 188 KGWEKIKFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEK--FSAKDLKDPAKRKKLRFNT 361
K K K R+K+KPF+K V+Y HL+PTRYSVD +F+K + + LK P+K++K
Sbjct: 55 KDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRKALVEV 114
Query: 362 RVRFEERYKSGKNKWFFQKLRF 427
+ +FEERYK+GKNKWFF KLRF
Sbjct: 115 KSKFEERYKTGKNKWFFTKLRF 136
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 31.5 bits (68), Expect = 0.26
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = -2
Query: 171 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWIFP 7
V+V E +WF+ + G +PA D H + + H+ W+ P
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWVPP 3482
>AF148953-1|AAD37410.1| 4450|Caenorhabditis elegans myotactin form B
protein.
Length = 4450
Score = 31.5 bits (68), Expect = 0.26
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = -2
Query: 171 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWIFP 7
V+V E +WF+ + G +PA D H + + H+ W+ P
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWVPP 3482
>AF040648-5|AAK21413.1| 4450|Caenorhabditis elegans Lethal protein
805, isoform b protein.
Length = 4450
Score = 31.5 bits (68), Expect = 0.26
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = -2
Query: 171 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWIFP 7
V+V E +WF+ + G +PA D H + + H+ W+ P
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWVPP 3482
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 31.5 bits (68), Expect = 0.26
Identities = 13/55 (23%), Positives = 22/55 (40%)
Frame = -2
Query: 171 VSVDAGDESMSVWFVRCALVVILYDNGFTACVPAAEDQHHFSRFHNLTHLGWIFP 7
V+V E +WF+ + G +PA D H + + H+ W+ P
Sbjct: 3428 VTVQGTSEGNKLWFISSVFSTTDFAEGLLNWLPAPTDLHLIEKSDTMLHVDWVPP 3482
>U00036-4|AAK29850.1| 217|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 6 protein.
Length = 217
Score = 29.5 bits (63), Expect = 1.1
Identities = 10/25 (40%), Positives = 19/25 (76%)
Frame = +1
Query: 31 KIMKPGKVVLVLSGRYAGRKAIVVK 105
K + PG V++VL+GR+ G++ + +K
Sbjct: 69 KTLTPGTVLIVLAGRHKGKRVVFLK 93
>Z81056-9|CAB02908.2| 292|Caenorhabditis elegans Hypothetical
protein F09F3.11 protein.
Length = 292
Score = 27.9 bits (59), Expect = 3.2
Identities = 24/92 (26%), Positives = 37/92 (40%), Gaps = 8/92 (8%)
Frame = -1
Query: 424 PKLLEEPFVLSALVSLFETDPCVETQLLALSWVF*VLCTEFFKAEVYRITGWH*M--IVV 251
P++L +A + T P +E + + T + + ITG + V
Sbjct: 61 PRILNVFVGQTAGFGAYVTGPILELFMSLNRFAALYFATRHLRISDFPITGIAIIGAFAV 120
Query: 250 YTFYERLDFRPHCEFYFFPSF------YEPCA 173
Y L FRP+C F F+P+ Y PCA
Sbjct: 121 AILYTCLGFRPNCGFVFYPATFTWDKEYTPCA 152
>Z73425-3|CAA97785.1| 451|Caenorhabditis elegans Hypothetical
protein F12F6.7 protein.
Length = 451
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 222 DRIVNFIFSHPFMNLARVSVDAGDESMSVW 133
D+I+N I P +N V+ GD S+W
Sbjct: 272 DKIINSIAEKPLVNTVDVTPGVGDPCSSMW 301
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 351 RSFLRLAGSFRSFALNFSKLKST 283
+SFL L G +R F LNF+++ S+
Sbjct: 1259 QSFLGLVGYYRKFILNFAQIASS 1281
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 351 RSFLRLAGSFRSFALNFSKLKST 283
+SFL L G +R F LNF+++ S+
Sbjct: 1162 QSFLGLVGYYRKFILNFAQIASS 1184
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -2
Query: 351 RSFLRLAGSFRSFALNFSKLKST 283
+SFL L G +R F LNF+++ S+
Sbjct: 1173 QSFLGLVGYYRKFILNFAQIASS 1195
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 27.1 bits (57), Expect = 5.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 324 KTQLSARSCVSTQGSVSKRDTRAERTNGSSRSLG 425
KT+ S S+ S + +DTR + G SRSLG
Sbjct: 376 KTKAKTASGASSVKSFASQDTRNKSNAGDSRSLG 409
>Z83113-4|CAB05546.2| 1020|Caenorhabditis elegans Hypothetical protein
K08H10.7 protein.
Length = 1020
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 152 SPASTDTRARFIKGWEK-IKFTMRSKIKPFVKGVNYNHLMPTRYSVDF 292
+PA TD +K WE+ +K + + I G + L+ ++Y DF
Sbjct: 868 TPAETDVAVAAVKQWEEDMKESKETGIVNPSSGTTVDKLIVSKYKFDF 915
>Z74038-2|CAE48502.1| 611|Caenorhabditis elegans Hypothetical
protein F58B4.1b protein.
Length = 611
Score = 26.6 bits (56), Expect = 7.4
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = -1
Query: 229 DFRPHCEFYFFPSFYEPCAGICRCRR-RKHVRMVCQMCPRRNS 104
D P+C+FY F G+CR ++ R + + C C N+
Sbjct: 534 DLHPNCDFYKF-------FGMCRSKKIRSNCKFTCHDCNNNNA 569
>Z19154-6|CAC35885.2| 388|Caenorhabditis elegans Hypothetical
protein C40H1.7 protein.
Length = 388
Score = 26.6 bits (56), Expect = 7.4
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 219 RIVNFIFSHPFMNLARVSVDAGDESMSVWF 130
+I NF + PF+N+ RV+ D S+W+
Sbjct: 152 KIGNFNGTVPFLNIGRVTKKFNDNFESLWY 181
>U80031-1|AAB37611.1| 392|Caenorhabditis elegans Downstream of
daf-16 (regulatedby daf-16) protein 20 protein.
Length = 392
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 134 HTDMLSSPASTDTRARFIKGWEKIKFTMRSKIKPFVKGVNYNHLMPTRYSVD 289
+T + S+P TD + EK ++ + +GVN++ + P YS+D
Sbjct: 188 NTQIFSNPMHTDKADLYFANVEKFSLSLVAFYLKTYRGVNFS-IEPGYYSID 238
>AF180730-1|AAF06159.1| 1020|Caenorhabditis elegans RNA interference
promoting factorRDE-1 protein.
Length = 1020
Score = 26.6 bits (56), Expect = 7.4
Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 152 SPASTDTRARFIKGWEK-IKFTMRSKIKPFVKGVNYNHLMPTRYSVDF 292
+PA TD +K WE+ +K + + I G + L+ ++Y DF
Sbjct: 868 TPAETDVAVAAVKQWEEDMKESKETGIVNPSSGTTVDKLIVSKYKFDF 915
>Z93779-1|CAB07849.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 55 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRY 171
++ ++G +G KA+ Y + D PYG + + G+ Y
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY 214
>Z78543-7|CAB01757.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 55 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRY 171
++ ++G +G KA+ Y + D PYG + + G+ Y
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY 214
>Z66566-5|CAA91487.2| 2103|Caenorhabditis elegans Hypothetical
protein T25C12.3 protein.
Length = 2103
Score = 26.2 bits (55), Expect = 9.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +1
Query: 55 VLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRY 171
++ ++G +G KA+ Y + D PYG + + G+ Y
Sbjct: 176 IIEVNGDPSGLKAVDGFVYSPQSDDPPYGESAINGVPMY 214
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,655,456
Number of Sequences: 27780
Number of extensions: 226196
Number of successful extensions: 713
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 699
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 711
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 703342068
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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