BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= S06A01NCLL0002_K02 (427 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 78 2e-15 At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi... 76 1e-14 At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) 75 2e-14 At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 33 0.061 At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 33 0.11 At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 33 0.11 At5g63900.1 68418.m08023 PHD finger family protein contains Pfam... 30 0.57 At1g66070.1 68414.m07499 translation initiation factor-related s... 29 1.00 At1g51510.1 68414.m05797 RNA-binding protein, putative similar t... 29 1.00 At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)... 27 4.0 At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)... 27 4.0 At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH)... 27 4.0 At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH)... 27 4.0 At1g70410.3 68414.m08100 carbonic anhydrase, putative / carbonat... 27 5.3 At1g70410.2 68414.m08101 carbonic anhydrase, putative / carbonat... 27 5.3 At1g70410.1 68414.m08099 carbonic anhydrase, putative / carbonat... 27 5.3 At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi... 27 7.0 At2g19080.1 68415.m02228 metaxin-related contains 1 transmembran... 27 7.0 At1g47310.1 68414.m05238 expressed protein 26 9.3 >At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) Length = 135 Score = 78.2 bits (184), Expect = 2e-15 Identities = 32/61 (52%), Positives = 45/61 (73%) Frame = +1 Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204 M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH VAG+ +YP KV ++ Sbjct: 1 MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60 Query: 205 K 207 K Sbjct: 61 K 61 Score = 72.5 bits (170), Expect = 1e-13 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%) Frame = +2 Query: 206 KFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEKF-SAKDLKDPAKRKKLRFNTRVRFEER 382 K +S++K F K +NY H+MPTRY++D + SA + K+ + +FEER Sbjct: 61 KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120 Query: 383 YKSGKNKWFFQKLRF 427 +K+GKN+WFF KLRF Sbjct: 121 FKTGKNRWFFTKLRF 135 >At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum tuberosum] Length = 135 Score = 75.8 bits (178), Expect = 1e-14 Identities = 33/78 (42%), Positives = 49/78 (62%) Frame = +1 Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204 M K +K K V++L GRYAG+KA+++K++D+GTSD+ YGH VAG+ +YP KV ++ Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60 Query: 205 KIHNAVENQAFRKRCKLQ 258 K + F K Q Sbjct: 61 KTAKKSRVKCFIKLVNYQ 78 Score = 75.8 bits (178), Expect = 1e-14 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Frame = +2 Query: 206 KFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEER 382 K +S++K F+K VNY HLMPTRY++D ++ + D LK K+ + + EER Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120 Query: 383 YKSGKNKWFFQKLRF 427 +K+GKN+WFF KLRF Sbjct: 121 FKTGKNRWFFTKLRF 135 >At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C) Length = 135 Score = 75.4 bits (177), Expect = 2e-14 Identities = 32/78 (41%), Positives = 48/78 (61%) Frame = +1 Query: 25 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204 M K +K K V++L GRYAG+KA+++K++D+G D+PYGH VAG+ +YP KV ++ Sbjct: 1 MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60 Query: 205 KIHNAVENQAFRKRCKLQ 258 K + F K Q Sbjct: 61 KTAKKSRVKCFIKLVNYQ 78 Score = 74.1 bits (174), Expect = 4e-14 Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 1/75 (1%) Frame = +2 Query: 206 KFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEER 382 K +S++K F+K VNY HLMPTRY++D ++ + D L+ K+ + + EER Sbjct: 61 KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120 Query: 383 YKSGKNKWFFQKLRF 427 +K+GKN+WFF KLRF Sbjct: 121 FKTGKNRWFFTKLRF 135 >At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar to 60S ribosomal protein L6 GI:7208784 from [Cicer arietinum] Length = 233 Score = 33.5 bits (73), Expect = 0.061 Identities = 11/35 (31%), Positives = 23/35 (65%) Frame = +1 Query: 16 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 120 P+K+ + PG V+++L+GR+ G++ + +K G Sbjct: 82 PTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116 >At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309 from [Cyanophora paradoxa] Length = 233 Score = 32.7 bits (71), Expect = 0.11 Identities = 11/35 (31%), Positives = 23/35 (65%) Frame = +1 Query: 16 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 120 P+K+ + PG V+++L+GR+ G++ + +K G Sbjct: 82 PAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116 >At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309 from [Cyanophora paradoxa] Length = 233 Score = 32.7 bits (71), Expect = 0.11 Identities = 11/35 (31%), Positives = 23/35 (65%) Frame = +1 Query: 16 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 120 P+K+ + PG V+++L+GR+ G++ + +K G Sbjct: 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116 >At5g63900.1 68418.m08023 PHD finger family protein contains Pfam domain, PF00628: PHD-finger Length = 557 Score = 30.3 bits (65), Expect = 0.57 Identities = 11/20 (55%), Positives = 15/20 (75%) Frame = +2 Query: 353 FNTRVRFEERYKSGKNKWFF 412 +N R + E+RYKS K KWF+ Sbjct: 58 YNKRNKKEQRYKSPKGKWFY 77 >At1g66070.1 68414.m07499 translation initiation factor-related similar to Eukaryotic translation initiation factor 3 subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j) (Swiss-Prot:O75822) [Homo sapiens] Length = 226 Score = 29.5 bits (63), Expect = 1.00 Identities = 18/60 (30%), Positives = 29/60 (48%) Frame = +2 Query: 224 KIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 403 +IKP+ K +Y L+ T + S A D+KD A N +++ E+ +GK K Sbjct: 139 RIKPYEKSYHYIALLKT--IMRLSLTNMKAADVKDVASSITTIANEKLKAEKEAAAGKKK 196 >At1g51510.1 68414.m05797 RNA-binding protein, putative similar to RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9 from [Homo sapiens], RNA-binding protein Y14 [Xenopus laevis] GI:11034807; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 202 Score = 29.5 bits (63), Expect = 1.00 Identities = 16/68 (23%), Positives = 33/68 (48%) Frame = +2 Query: 167 DTRARFIKGWEKIKFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKK 346 D R+ ++KG+ I++ + + + + +N L+ SVD++F S + +RK Sbjct: 129 DRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFS--SGPSGGESYRRKN 186 Query: 347 LRFNTRVR 370 R+ R Sbjct: 187 SRYGRSQR 194 >At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1) identical to transcription factor (TGA1) GI:16550 from [Arabidopsis thaliana] Length = 368 Score = 27.5 bits (58), Expect = 4.0 Identities = 15/61 (24%), Positives = 28/61 (45%) Frame = +1 Query: 97 VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHNAVENQAFRKRCKLQSSNANP 276 V ++ GT+ P+ A R+P K+ +R+ +N+ A RK+ +Q + Sbjct: 57 VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNR--EAARKSRLRKKAYVQQLETSR 114 Query: 277 L 279 L Sbjct: 115 L 115 >At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1) identical to transcription factor (TGA1) GI:16550 from [Arabidopsis thaliana] Length = 368 Score = 27.5 bits (58), Expect = 4.0 Identities = 15/61 (24%), Positives = 28/61 (45%) Frame = +1 Query: 97 VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHNAVENQAFRKRCKLQSSNANP 276 V ++ GT+ P+ A R+P K+ +R+ +N+ A RK+ +Q + Sbjct: 57 VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNR--EAARKSRLRKKAYVQQLETSR 114 Query: 277 L 279 L Sbjct: 115 L 115 >At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH) similar to aldehyde dehydrogenase ALDH [Craterostigma plantagineum] gi|17065918|emb|CAC84900 Length = 484 Score = 27.5 bits (58), Expect = 4.0 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +2 Query: 158 ASTDTRARFIKGWEKIKFTMRSKIKPFVKGVNYNHLMP 271 A T+T A + W+KI +T SKI + HL P Sbjct: 177 AVTETSALLEQKWDKIFYTGSSKIGRVIMAAAAKHLTP 214 >At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH) similar to aldehyde dehydrogenase ALDH [Craterostigma plantagineum] gi|17065918|emb|CAC84900 Length = 484 Score = 27.5 bits (58), Expect = 4.0 Identities = 14/38 (36%), Positives = 19/38 (50%) Frame = +2 Query: 158 ASTDTRARFIKGWEKIKFTMRSKIKPFVKGVNYNHLMP 271 A T+T A + W+KI +T SKI + HL P Sbjct: 177 AVTETSALLEQKWDKIFYTGSSKIGRVIMAAAAKHLTP 214 >At1g70410.3 68414.m08100 carbonic anhydrase, putative / carbonate dehydratase, putative similar to SP|P42737 Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2) {Arabidopsis thaliana}; contains Pfam profile PF00484: Carbonic anhydrase Length = 258 Score = 27.1 bits (57), Expect = 5.3 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +2 Query: 170 TRARFIKGWEKIKFTMRSKIKPFVKGVNYN 259 T++ FI+ W KI + R+KIK K ++Y+ Sbjct: 166 TQSDFIENWVKIGASARNKIKEEHKDLSYD 195 >At1g70410.2 68414.m08101 carbonic anhydrase, putative / carbonate dehydratase, putative similar to SP|P42737 Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2) {Arabidopsis thaliana}; contains Pfam profile PF00484: Carbonic anhydrase Length = 280 Score = 27.1 bits (57), Expect = 5.3 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +2 Query: 170 TRARFIKGWEKIKFTMRSKIKPFVKGVNYN 259 T++ FI+ W KI + R+KIK K ++Y+ Sbjct: 188 TQSDFIENWVKIGASARNKIKEEHKDLSYD 217 >At1g70410.1 68414.m08099 carbonic anhydrase, putative / carbonate dehydratase, putative similar to SP|P42737 Carbonic anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2) {Arabidopsis thaliana}; contains Pfam profile PF00484: Carbonic anhydrase Length = 258 Score = 27.1 bits (57), Expect = 5.3 Identities = 12/30 (40%), Positives = 20/30 (66%) Frame = +2 Query: 170 TRARFIKGWEKIKFTMRSKIKPFVKGVNYN 259 T++ FI+ W KI + R+KIK K ++Y+ Sbjct: 166 TQSDFIENWVKIGASARNKIKEEHKDLSYD 195 >At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing protein contains Pfam profile PF00515: TPR Domain Length = 1311 Score = 26.6 bits (56), Expect = 7.0 Identities = 20/90 (22%), Positives = 39/90 (43%) Frame = +1 Query: 28 GKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK 207 G+++KP ++ +L R + ++ + D G K ++ K ++ K Sbjct: 778 GRVLKPLELYAIL--RDSSENVVIEASVD-GWVHKRLMKLYMDCCQSLSEKPSMKLLKKL 834 Query: 208 IHNAVENQAFRKRCKLQSSNANPLFCRLQL 297 + VE+ C+LQ +A PL C L + Sbjct: 835 YISEVEDDINVSECELQDISAAPLLCALHV 864 >At2g19080.1 68415.m02228 metaxin-related contains 1 transmembrane domain; similar to Metaxin 1 (component of a preprotein import complex) (Swiss-Prot:P47802) [Mus musculus]; Length = 315 Score = 26.6 bits (56), Expect = 7.0 Identities = 14/44 (31%), Positives = 22/44 (50%) Frame = +1 Query: 121 TSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHNAVENQAFRKRCK 252 +S P H+F + +PRK K K K+ E + F+KR + Sbjct: 243 SSPSPPLHSFPSS---FPRKSSKPKSKPKVEKTEEEKKFKKRAR 283 >At1g47310.1 68414.m05238 expressed protein Length = 395 Score = 26.2 bits (55), Expect = 9.3 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +2 Query: 341 KKLRFNTRVRFEERYKSGKNKWFF 412 KK+R T RFE R + GK+++ F Sbjct: 67 KKIRIGTSRRFEIRIRLGKSRFVF 90 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,140,436 Number of Sequences: 28952 Number of extensions: 209505 Number of successful extensions: 630 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 620 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 627 length of database: 12,070,560 effective HSP length: 74 effective length of database: 9,928,112 effective search space used: 665183504 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -