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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K02
         (427 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A)            78   2e-15
At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) simi...    76   1e-14
At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)            75   2e-14
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila...    33   0.061
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila...    33   0.11 
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila...    33   0.11 
At5g63900.1 68418.m08023 PHD finger family protein contains Pfam...    30   0.57 
At1g66070.1 68414.m07499 translation initiation factor-related s...    29   1.00 
At1g51510.1 68414.m05797 RNA-binding protein, putative similar t...    29   1.00 
At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)...    27   4.0  
At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)...    27   4.0  
At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH)...    27   4.0  
At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH)...    27   4.0  
At1g70410.3 68414.m08100 carbonic anhydrase, putative / carbonat...    27   5.3  
At1g70410.2 68414.m08101 carbonic anhydrase, putative / carbonat...    27   5.3  
At1g70410.1 68414.m08099 carbonic anhydrase, putative / carbonat...    27   5.3  
At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containi...    27   7.0  
At2g19080.1 68415.m02228 metaxin-related contains 1 transmembran...    27   7.0  
At1g47310.1 68414.m05238 expressed protein                             26   9.3  

>At2g32220.1 68415.m03937 60S ribosomal protein L27 (RPL27A) 
          Length = 135

 Score = 78.2 bits (184), Expect = 2e-15
 Identities = 32/61 (52%), Positives = 45/61 (73%)
 Frame = +1

Query: 25  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
           M K MKPGK V++L GRY G+KA++VK++D+GT +K YGH  VAG+ +YP KV ++    
Sbjct: 1   MVKCMKPGKAVILLQGRYTGKKAVIVKSFDDGTVEKKYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 205 K 207
           K
Sbjct: 61  K 61



 Score = 72.5 bits (170), Expect = 1e-13
 Identities = 32/75 (42%), Positives = 47/75 (62%), Gaps = 1/75 (1%)
 Frame = +2

Query: 206 KFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEKF-SAKDLKDPAKRKKLRFNTRVRFEER 382
           K   +S++K F K +NY H+MPTRY++D   +   SA  +    K+       + +FEER
Sbjct: 61  KTAKKSRVKCFFKVINYQHVMPTRYTLDLDLKNVVSADAISSKDKKVTALKEAKAKFEER 120

Query: 383 YKSGKNKWFFQKLRF 427
           +K+GKN+WFF KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>At3g22230.1 68416.m02804 60S ribosomal protein L27 (RPL27B) similar
           to 60S RIBOSOMAL PROTEIN L27 GB:P41101 from [Solanum
           tuberosum]
          Length = 135

 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 33/78 (42%), Positives = 49/78 (62%)
 Frame = +1

Query: 25  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
           M K +K  K V++L GRYAG+KA+++K++D+GTSD+ YGH  VAG+ +YP KV ++    
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGTSDRRYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 205 KIHNAVENQAFRKRCKLQ 258
           K       + F K    Q
Sbjct: 61  KTAKKSRVKCFIKLVNYQ 78



 Score = 75.8 bits (178), Expect = 1e-14
 Identities = 34/75 (45%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
 Frame = +2

Query: 206 KFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEER 382
           K   +S++K F+K VNY HLMPTRY++D   ++ +  D LK   K+       + + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALKSKDKKVTALKEAKAKLEER 120

Query: 383 YKSGKNKWFFQKLRF 427
           +K+GKN+WFF KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>At4g15000.1 68417.m02304 60S ribosomal protein L27 (RPL27C)
          Length = 135

 Score = 75.4 bits (177), Expect = 2e-14
 Identities = 32/78 (41%), Positives = 48/78 (61%)
 Frame = +1

Query: 25  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKN 204
           M K +K  K V++L GRYAG+KA+++K++D+G  D+PYGH  VAG+ +YP KV ++    
Sbjct: 1   MVKFLKQNKAVILLQGRYAGKKAVIIKSFDDGNRDRPYGHCLVAGLKKYPSKVIRKDSAK 60

Query: 205 KIHNAVENQAFRKRCKLQ 258
           K       + F K    Q
Sbjct: 61  KTAKKSRVKCFIKLVNYQ 78



 Score = 74.1 bits (174), Expect = 4e-14
 Identities = 33/75 (44%), Positives = 49/75 (65%), Gaps = 1/75 (1%)
 Frame = +2

Query: 206 KFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKD-LKDPAKRKKLRFNTRVRFEER 382
           K   +S++K F+K VNY HLMPTRY++D   ++ +  D L+   K+       + + EER
Sbjct: 61  KTAKKSRVKCFIKLVNYQHLMPTRYTLDVDLKEVATLDALQSKDKKVAALKEAKAKLEER 120

Query: 383 YKSGKNKWFFQKLRF 427
           +K+GKN+WFF KLRF
Sbjct: 121 FKTGKNRWFFTKLRF 135


>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
           to 60S ribosomal protein L6 GI:7208784 from [Cicer
           arietinum]
          Length = 233

 Score = 33.5 bits (73), Expect = 0.061
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 16  PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 120
           P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 82  PTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSG 116


>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 16  PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 120
           P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 82  PAKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116


>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
           to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
           from [Cyanophora paradoxa]
          Length = 233

 Score = 32.7 bits (71), Expect = 0.11
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +1

Query: 16  PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 120
           P+K+   + PG V+++L+GR+ G++ + +K    G
Sbjct: 82  PTKLRASITPGTVLIILAGRFKGKRVVFLKQLASG 116


>At5g63900.1 68418.m08023 PHD finger family protein contains Pfam
           domain, PF00628: PHD-finger
          Length = 557

 Score = 30.3 bits (65), Expect = 0.57
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 353 FNTRVRFEERYKSGKNKWFF 412
           +N R + E+RYKS K KWF+
Sbjct: 58  YNKRNKKEQRYKSPKGKWFY 77


>At1g66070.1 68414.m07499 translation initiation factor-related
           similar to Eukaryotic translation initiation factor 3
           subunit 1 (eIF-3 alpha) (eIF3 p35) (eIF3j)
           (Swiss-Prot:O75822) [Homo sapiens]
          Length = 226

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +2

Query: 224 KIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKKLRFNTRVRFEERYKSGKNK 403
           +IKP+ K  +Y  L+ T   +  S     A D+KD A       N +++ E+   +GK K
Sbjct: 139 RIKPYEKSYHYIALLKT--IMRLSLTNMKAADVKDVASSITTIANEKLKAEKEAAAGKKK 196


>At1g51510.1 68414.m05797 RNA-binding protein, putative similar to
           RNA-binding protein 8 (Ribonucleoprotein RBM8) SP:Q9Y5S9
           from [Homo sapiens], RNA-binding protein Y14 [Xenopus
           laevis] GI:11034807; contains InterPro entry IPR000504:
           RNA-binding region RNP-1 (RNA recognition motif) (RRM)
          Length = 202

 Score = 29.5 bits (63), Expect = 1.00
 Identities = 16/68 (23%), Positives = 33/68 (48%)
 Frame = +2

Query: 167 DTRARFIKGWEKIKFTMRSKIKPFVKGVNYNHLMPTRYSVDFSFEKFSAKDLKDPAKRKK 346
           D R+ ++KG+  I++  + + +  +  +N   L+    SVD++F   S     +  +RK 
Sbjct: 129 DRRSGYVKGYALIEYEKKEEAQSAISAMNGAELLTQNVSVDWAFS--SGPSGGESYRRKN 186

Query: 347 LRFNTRVR 370
            R+    R
Sbjct: 187 SRYGRSQR 194


>At5g65210.2 68418.m08204 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 97  VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHNAVENQAFRKRCKLQSSNANP 276
           V ++   GT+  P+     A   R+P K+ +R+ +N+   A      RK+  +Q    + 
Sbjct: 57  VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNR--EAARKSRLRKKAYVQQLETSR 114

Query: 277 L 279
           L
Sbjct: 115 L 115


>At5g65210.1 68418.m08203 bZIP family transcription factor (TGA1)
           identical to transcription factor (TGA1) GI:16550 from
           [Arabidopsis thaliana]
          Length = 368

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 15/61 (24%), Positives = 28/61 (45%)
 Frame = +1

Query: 97  VVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHNAVENQAFRKRCKLQSSNANP 276
           V ++   GT+  P+     A   R+P K+ +R+ +N+   A      RK+  +Q    + 
Sbjct: 57  VSEDTSHGTAGTPHMFDQEASTSRHPDKIQRRLAQNR--EAARKSRLRKKAYVQQLETSR 114

Query: 277 L 279
           L
Sbjct: 115 L 115


>At1g44170.2 68414.m05102 aldehyde dehydrogenase, putative (ALDH)
           similar to aldehyde dehydrogenase ALDH [Craterostigma
           plantagineum] gi|17065918|emb|CAC84900
          Length = 484

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 158 ASTDTRARFIKGWEKIKFTMRSKIKPFVKGVNYNHLMP 271
           A T+T A   + W+KI +T  SKI   +      HL P
Sbjct: 177 AVTETSALLEQKWDKIFYTGSSKIGRVIMAAAAKHLTP 214


>At1g44170.1 68414.m05101 aldehyde dehydrogenase, putative (ALDH)
           similar to aldehyde dehydrogenase ALDH [Craterostigma
           plantagineum] gi|17065918|emb|CAC84900
          Length = 484

 Score = 27.5 bits (58), Expect = 4.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 158 ASTDTRARFIKGWEKIKFTMRSKIKPFVKGVNYNHLMP 271
           A T+T A   + W+KI +T  SKI   +      HL P
Sbjct: 177 AVTETSALLEQKWDKIFYTGSSKIGRVIMAAAAKHLTP 214


>At1g70410.3 68414.m08100 carbonic anhydrase, putative / carbonate
           dehydratase, putative similar to SP|P42737 Carbonic
           anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2)
           {Arabidopsis thaliana}; contains Pfam profile PF00484:
           Carbonic anhydrase
          Length = 258

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 170 TRARFIKGWEKIKFTMRSKIKPFVKGVNYN 259
           T++ FI+ W KI  + R+KIK   K ++Y+
Sbjct: 166 TQSDFIENWVKIGASARNKIKEEHKDLSYD 195


>At1g70410.2 68414.m08101 carbonic anhydrase, putative / carbonate
           dehydratase, putative similar to SP|P42737 Carbonic
           anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2)
           {Arabidopsis thaliana}; contains Pfam profile PF00484:
           Carbonic anhydrase
          Length = 280

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 170 TRARFIKGWEKIKFTMRSKIKPFVKGVNYN 259
           T++ FI+ W KI  + R+KIK   K ++Y+
Sbjct: 188 TQSDFIENWVKIGASARNKIKEEHKDLSYD 217


>At1g70410.1 68414.m08099 carbonic anhydrase, putative / carbonate
           dehydratase, putative similar to SP|P42737 Carbonic
           anhydrase 2 (EC 4.2.1.1) (Carbonate dehydratase 2)
           {Arabidopsis thaliana}; contains Pfam profile PF00484:
           Carbonic anhydrase
          Length = 258

 Score = 27.1 bits (57), Expect = 5.3
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = +2

Query: 170 TRARFIKGWEKIKFTMRSKIKPFVKGVNYN 259
           T++ FI+ W KI  + R+KIK   K ++Y+
Sbjct: 166 TQSDFIENWVKIGASARNKIKEEHKDLSYD 195


>At3g18730.1 68416.m02378 tetratricopeptide repeat (TPR)-containing
            protein contains Pfam profile PF00515: TPR Domain
          Length = 1311

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 20/90 (22%), Positives = 39/90 (43%)
 Frame = +1

Query: 28   GKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSDKPYGHAFVAGIDRYPRKVHKRMGKNK 207
            G+++KP ++  +L  R +    ++  + D G   K     ++        K   ++ K  
Sbjct: 778  GRVLKPLELYAIL--RDSSENVVIEASVD-GWVHKRLMKLYMDCCQSLSEKPSMKLLKKL 834

Query: 208  IHNAVENQAFRKRCKLQSSNANPLFCRLQL 297
              + VE+      C+LQ  +A PL C L +
Sbjct: 835  YISEVEDDINVSECELQDISAAPLLCALHV 864


>At2g19080.1 68415.m02228 metaxin-related contains 1 transmembrane
           domain; similar to Metaxin 1 (component of a preprotein
           import complex) (Swiss-Prot:P47802) [Mus musculus];
          Length = 315

 Score = 26.6 bits (56), Expect = 7.0
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 121 TSDKPYGHAFVAGIDRYPRKVHKRMGKNKIHNAVENQAFRKRCK 252
           +S  P  H+F +    +PRK  K   K K+    E + F+KR +
Sbjct: 243 SSPSPPLHSFPSS---FPRKSSKPKSKPKVEKTEEEKKFKKRAR 283


>At1g47310.1 68414.m05238 expressed protein
          Length = 395

 Score = 26.2 bits (55), Expect = 9.3
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 341 KKLRFNTRVRFEERYKSGKNKWFF 412
           KK+R  T  RFE R + GK+++ F
Sbjct: 67  KKIRIGTSRRFEIRIRLGKSRFVF 90


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,140,436
Number of Sequences: 28952
Number of extensions: 209505
Number of successful extensions: 630
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 665183504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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