Samia BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0002_K01
         (636 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)        231   5e-61
SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_41410| Best HMM Match : 7tm_1 (HMM E-Value=0.00049)                 29   3.2  
SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  27   9.7  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score =  231 bits (564), Expect = 5e-61
 Identities = 110/157 (70%), Positives = 129/157 (82%)
 Frame = +3

Query: 129 QLLDEYPKCFIVGADNVGSQQMQQIRISLRGHSIVLMGKNTMMRKAIKDHLETNPALEKL 308
           Q LDEYPK F+VG DNVGS+QMQ IR SLRG   VLMGKNTM+RKAI+ HLE NP LEKL
Sbjct: 1   QYLDEYPKLFLVGVDNVGSKQMQTIRQSLRGQGEVLMGKNTMIRKAIRGHLENNPDLEKL 60

Query: 309 LPHIKGNVGFVFTRGDLVDVRDKLLENKVQAPARPGAIAPLSVVIPAHNTGLGPEKTSFF 488
           LPHIKGN+GFVFT+ DL DVR  ++ENKV APA+ G IAP+ V +PA NTGLGPEKTSFF
Sbjct: 61  LPHIKGNIGFVFTKEDLADVRKIIMENKVAAPAKAGVIAPIDVFVPAGNTGLGPEKTSFF 120

Query: 489 QALSIPTKISKGTIEIISDVHILKPGDKVGASEATSS 599
           QAL+IPTKI++GTIEII+DVH++K  +K+ A  A  S
Sbjct: 121 QALAIPTKIARGTIEIINDVHLIKKDEKLKAFLADPS 157


>SB_8680| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2462

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 384  ENKVQAPARPGAIAPLSVVIPAHN--TGLGPEKTSFFQALSIPTKISKGTIEIISDVHIL 557
            E ++ +PA     +P S+        TGL P   S  Q LS+ T +   ++   +D+   
Sbjct: 2069 EPRIVSPAGSSLASPTSIATSVITGVTGLHPVTVSHHQPLSVITSLVSASVSSTTDMQNS 2128

Query: 558  KPGDK 572
             PG K
Sbjct: 2129 TPGKK 2133


>SB_41410| Best HMM Match : 7tm_1 (HMM E-Value=0.00049)
          Length = 780

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -2

Query: 110 IGLPGSLVLPTHLGLSEVGTSEKFKDKTNTHRPLPR 3
           IG+  +L LP    +    T  KF +K N  RP PR
Sbjct: 331 IGIHDNLCLPRKSWIYRYRTVTKFNNKANVERPSPR 366


>SB_37596| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 200 DPYFIAWSQHCAHGQKHHDEESHQGPS*NKSSSRKTASS 316
           D Y     QH  H Q  HD ++H+  + +++++R  A S
Sbjct: 144 DQYTTQPDQHMTHNQIDHDTQTHRPTTRSQTNTRHAARS 182


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 577  PTLSPGFRIWTSLIISIVPFEILVGMERAWKKEVFSGPR 461
            P   P FR   +L+ ++  ++    M RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,891,625
Number of Sequences: 59808
Number of extensions: 484111
Number of successful extensions: 1228
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1226
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)